| Protein: | amos-PA |
| Organism: | Drosophila melanogaster |
| Length: | 198 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amos-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
154.0 | [0..1] | [198..1] |
|
|
101.0 | [0..72] | [196..1] |
|
|
100.0 | [0..72] | [196..6] |
|
|
100.0 | [0..31] | [195..2] |
|
|
96.0 | [0..72] | [196..1] |
|
|
96.0 | [0..40] | [197..2] |
|
|
96.0 | [0..40] | [197..2] |
|
|
96.0 | [0..57] | [195..7] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MLTNNELMEQ FYFPDEAPAI PEFLSNDTFQ QLEQLMYQQE FSTSDSQSDG ANSCSLEMYY 60
61 DTPSVLELEH MLNAQEQQQH HLQANPLGKN QGRSPRYWNK QQRSKPYDKL STSMSSSTSS 120
121 ASSSSSSSA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [130-198] |
1 11 21 31 41 51
| | | | | |
1 GFGGEVLKKR RLAANARERR RMNSLNDAFD KLRDVVPSLG HDRRLSKYET LQMAQAYIGD 60
61 LVTLLSRDY
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 1mdyA |
| Description: | Myod B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription activator activity | 2.5495467409976 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.48787404513864 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.31910036997977 | bayes_pls_golite062009 |
| protein binding | 1.59929864805879 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 1.46304579811572 | bayes_pls_golite062009 |
| transcription repressor activity | 0.955588849035129 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.801830750183111 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
