YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309852, CG1...
Organism:	Drosophila melanogaster
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309852, CG1....

Description	E-value	Query Range	Subject Range
gi\|28416333 - gi\|28416333\|gb\|AAO42639.1\| RH49324p [Drosophila melanogaster]	213.0	[0..1]	[120..35]
gi\|194174267, gi... - gi\|38048331\|gb\|AAR10068.1\| similar to Drosophila melanogaster CG11015 [Drosophila yakuba], gi\|380481...	209.0	[0..1]	[120..1]
gi\|198145099, gi... - gi\|198477059\|ref\|XP_002136780.1\| GA28177 [Drosophila pseudoobscura pseudoobscura], gi\|198145099\|gb\|E... gi\|125987063, gi... - gi\|54645625\|gb\|EAL34363.1\| GA10709 [Drosophila pseudoobscura pseudoobscura], gi\|125987063\|ref\|XP_001... gi\|194115112, gi... - gi\|195156141\|ref\|XP_002018959.1\| GL25676 [Drosophila persimilis], gi\|194115112\|gb\|EDW37155.1\| GL2567...	206.0	[0..1]	[120..1]
gi\|55239920, gi\|... - gi\|58386537\|ref\|XP_314835.2\| AGAP008724-PA [Anopheles gambiae str. PEST], gi\|55239920\|gb\|EAA10211.2\|... AGAP008724-PA - Mitochondrial cytochrome c oxidase subunit 5B isoform 1\|protein_coding\|3R:16068036:16069060:-1\|gene:...	198.0	[0..1]	[120..1]
gi\|108875295, gi... - gi\|157134235\|ref\|XP_001663201.1\| cytochrome c oxidase, subunit VB, putative [Aedes aegypti], gi\|1571...	191.0	[0..1]	[120..1]
gi\|74152883, gi\|... - gi\|74199859\|dbj\|BAE20757.1\| unnamed protein product [Mus musculus], gi\|74152883\|dbj\|BAE22451.1\| unna...	172.0	[0..1]	[115..1]
COX5B_RAT - Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus GN=Cox5b PE=1 SV=2	171.0	[0..1]	[115..1]
COX5B_BOVIN - Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus GN=COX5B PE=1 SV=2	167.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASICGRMAL RAAARQNVAY TPVRFCKMMN DPLEHATGIE KRELLLKAAG NDNPFDMKVF  60
   61 KRGAGTKENP NLIPSAFDAR IVGCICEEDQ TYVQWMWLQK GNQKRCECGH WFKLVEKAAV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.30103
Match:	1occF
Description:	Cytochrome c oxidase Subunit F
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	11.8078336041861	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	11.8078336041861	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	11.8078336041861	bayes_pls_golite062009
heme-copper terminal oxidase activity	11.4955994709345	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.35533851539468	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.20400060522221	bayes_pls_golite062009
electron carrier activity	4.79439258177657	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.61075334342911	bayes_pls_golite062009
oxidoreductase activity	4.60275002826443	bayes_pls_golite062009
transporter activity	1.97498735657997	bayes_pls_golite062009
substrate-specific transporter activity	1.91183744916449	bayes_pls_golite062009
transmembrane transporter activity	1.8957438694805	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.85081519357893	bayes_pls_golite062009
ion transmembrane transporter activity	1.8134262516178	bayes_pls_golite062009
cation transmembrane transporter activity	1.76519144994124	bayes_pls_golite062009
binding	1.21177849202369	bayes_pls_golite062009
catalytic activity	0.176396048613815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: