| Protein: | PRRX1_RAT |
| Organism: | Rattus norvegicus |
| Length: | 245 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRRX1_RAT.
| Description | E-value | Query Range |
Subject Range |
|
|
155.0 | [0..1] | [245..1] |
|
|
152.0 | [0..1] | [245..1] |
|
|
145.0 | [0..1] | [245..1] |
|
|
144.0 | [0..3] | [182..28] |
|
|
143.0 | [0..3] | [231..152] |
|
|
142.0 | [0..3] | [245..141] |
|
|
140.0 | [0..3] | [231..133] |
|
|
140.0 | [0..3] | [245..144] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MTSSYGHVLE RQPALGGRLD SPGNLDTLQA KKNFSVSHLL DLEEAGDMVA AQADESVGEA 60
61 GRSLLESPGL TSGSDTPQQD NDQLNSEEKK KRKQRRNRTT FNSSQLQALE RVFERTHYPD 120
121 AFVREDLARR VNLTEARVQV WFQNRRAKFR RNERAML
|
| Detection Method: |  |
| Confidence: | 23.69897 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.529774583092406 | bayes_pls_golite062009 |
|
Region A: Residues: [158-245] |
1 11 21 31 41 51
| | | | | |
1 ANKNASLLKS YSGDVTAVEQ PIVPRPAPRP TDYLSWGTAS PYSAMATYSA TCANNSPAQG 60
61 INMANSIANL RLKAKEYSLQ RNQVPTVN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
