YRC Public Data Repository - Protein Structure Prediction

Protein:	RABP2_RAT
Organism:	Rattus norvegicus
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RABP2_RAT.

Description	E-value	Query Range	Subject Range
gi\|114658435 - gi\|114658435\|ref\|XP_001142851.1\| PREDICTED: similar to cellular retinoic acid-binding protein; CRABP...	193.0	[0..1]	[139..245]
gi\|162906, gi\|30... - gi\|30794346\|ref\|NP_851371.1\| cellular retinoic acid binding protein 1 [Bos taurus], gi\|162906\|gb\|AAA...	181.0	[0..1]	[139..1]
ENSOCUP000000003... - pep:novel scaffold:oryCun2:GL018746:701847:707770:1 gene:ENSOCUG00000000431 transcript:ENSOCUT000000... tr\|G3H0C0\|G3H0C0... - Cellular retinoic acid-binding protein 1 OS=Cricetulus griseus GN=I79_003575 PE=3 SV=1 gi\|50545 - gi\|50545\|emb\|CAA33509.1\| unnamed protein product [Mus sp.] RABP1_RAT - Cellular retinoic acid-binding protein 1 OS=Rattus norvegicus GN=Crabp1 PE=1 SV=3 RABP1_BOVIN - Cellular retinoic acid-binding protein 1 OS=Bos taurus GN=CRABP1 PE=1 SV=2 RABP1_MOUSE - Cellular retinoic acid-binding protein 1 OS=Mus musculus GN=Crabp1 PE=1 SV=2 gi\|239916544 - gi\|239916544\|gb\|ACS34761.1\| cellular retinoic acid binding protein I [Mesocricetus auratus]	177.0	[0..1]	[139..1]
CRABP1 - cellular retinoic acid binding protein 1 ENSPTRT00000013536 - null gi\|149691749 - gi\|149691749\|ref\|XP_001488972.1\| PREDICTED: similar to Cellular retinoic acid-binding protein 1 (Cel... ENSCJAT00000019948 - null gi\|148470135, gi... - gi\|190360581\|ref\|NP_001121964.1\| cellular retinoic acid binding protein 1 [Sus scrofa], gi\|148470135... gi\|109082058 - gi\|109082058\|ref\|XP_001107715.1\| PREDICTED: cellular retinoic acid binding protein 1 [Macaca mulatta...	176.0	[0..1]	[139..1]
gi\|54696514, gi\|... - gi\|61369119\|gb\|AAX43288.1\| cellular retinoic acid binding protein 2 [synthetic construct], gi\|613689...	176.0	[0..1]	[139..1]
RABP1_CHICK - Cellular retinoic acid-binding protein 1 OS=Gallus gallus GN=CRABP1 PE=2 SV=4	176.0	[0..1]	[139..1]
gi\|73961545 - gi\|73961545\|ref\|XP_854915.1\| PREDICTED: similar to Retinoic acid-binding protein II, cellular (CRABP...	175.0	[0..1]	[139..1]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNFSGNWKI IRSENFEEML KALGVNMMMR KIAVAAASKP AVEIKQENDD TFYIKTSTTV  60
   61 RTTEINFKIG EEFEEQTVDG RPCKSLVKWE SENKMVCEQR LLKGEGPKTS WSRELTNDGE 120
  121 LILTMTADDV VCTRVYVRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1blrA
Description:	NMR SOLUTION STRUCTURE OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II, 22 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
long-chain fatty acid transporter activity	5.31242454679135	bayes_pls_golite062009
fatty acid transporter activity	5.05947161650978	bayes_pls_golite062009
lipid transporter activity	4.30505384117861	bayes_pls_golite062009
retinoid binding	3.86745158299736	bayes_pls_golite062009
isoprenoid binding	3.80802424204178	bayes_pls_golite062009
lysophospholipid transporter activity	3.53484598441971	bayes_pls_golite062009
retinol binding	3.41359399354212	bayes_pls_golite062009
binding	2.93830472620404	bayes_pls_golite062009
transcription regulator activity	2.27413749831465	bayes_pls_golite062009
transporter activity	2.15627660314839	bayes_pls_golite062009
transcription repressor activity	1.45696778890481	bayes_pls_golite062009
protein binding	1.23450129884619	bayes_pls_golite062009
prostaglandin-D synthase activity	1.18764036773412	bayes_pls_golite062009
lipid binding	1.0002255159651	bayes_pls_golite062009
retinol transporter activity	0.811095267558536	bayes_pls_golite062009
fatty acid binding	0.761923641769607	bayes_pls_golite062009
substrate-specific transporter activity	0.670647472301401	bayes_pls_golite062009
retinoic acid binding	0.539496110498594	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.50851501669551	bayes_pls_golite062009
bile acid binding	0.37501307074598	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: