| Protein: | gi|117645444, gi... |
| Organism: | synthetic construct |
| Length: | 472 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117645444, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-72 | [10..472] | [201..661] |
|
|
1.0E-66 | [1..472] | [1..472] |
|
|
3.0E-65 | [1..472] | [1..473] |
|
|
2.0E-63 | [1..472] | [1..468] |
|
|
1.0E-62 | [1..472] | [1..468] |
|
|
1.0E-62 | [1..472] | [1..477] |
|
|
3.0E-58 | [1..472] | [1..466] |
|
|
3.0E-57 | [1..457] | [1..465] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MLGTVKMEGH ETSDWNSYYA DTQEAYSSVP VSNMNSGLGS MNSMNTYMTM NTMTTSGNMT 60
61 PASFNMSYAN PGLGAGLSPG AVAGMPGGSA GAMNSMTAAG VTAMGTALSP SGMGAMGAQQ 120
121 AASMNGLGPY AAAMNPCMSP MAYAPSNLGR S
|
| Detection Method: |  |
| Confidence: | 1.05 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [152-274] |
1 11 21 31 41 51
| | | | | |
1 RAGGGGDAKT FKRSYPHAKP PYSYISLITM AIQQAPSKML TLSEIYQWIM DLFPYYRQNQ 60
61 QRWQNSIRHS LSFNDCFVKV ARSPDKPGKG SYWTLHPDSG NMFENGCYLR RQKRFKCEKQ 120
121 PGA
|
| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 1d5vA |
| Description: | Adipocyte-transcription factor FREAC-11 (s12, fkh-14) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription repressor activity | 3.85678231380989 | bayes_pls_golite062009 |
| transcription activator activity | 3.70589483230587 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.58179858678904 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.2723726467408 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.96257232341735 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.322180400748724 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
|
Region A: Residues: [275-382] |
1 11 21 31 41 51
| | | | | |
1 GGGGGSGSGG SGAKGGPESR KDPSGASNPS ADSPLHRGVH GKTGQLEGAP APGPAASPQT 60
61 LDHSGATATG GASELKTPAS STAPPISSGP GALASVPASH PAHGLAPH
|
| Detection Method: | |
| Confidence: | 1.05 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [383-472] |
1 11 21 31 41 51
| | | | | |
1 ESQLHLKGDP HYSFNHPFSI NNLMSSSEQQ HKLDFKAYEQ ALQYSPYGST LPASLPLGSA 60
61 SVTTRSPIEP SALEPAYYQG VYSRPVLNTS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
