| Protein: | gi|119352249 |
| Organism: | Plasmodium falciparum |
| Length: | 875 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119352249.
| Description | E-value | Query Range |
Subject Range |
|
|
513.0 | [0..1] | [869..1] |
|
|
510.0 | [0..1] | [875..1] |
|
|
392.0 | [0..1] | [684..1] |
|
|
370.0 | [0..93] | [875..1] |
|
|
368.0 | [0..93] | [875..1] |
|
|
344.0 | [0..102] | [875..11] |
|
|
331.0 | [0..382] | [875..19] |
|
|
329.0 | [0..357] | [874..19] |
|
|
326.0 | [0..357] | [874..19] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MIATGTNMMH PSFSTASLYV GDLNEDVTEA VLYEIFNTVG HVSSIRVCRD SVTRKSLGYA 60
61 YVNYHNLADA ERALDTLNYT NIKGQPARLM WSHRDPSLRK SGTGNIFVKN LDKSIDNKAL 120
121 FDTFSMFGNI LSCKVATDEF GKSKSYGFVH YEDEESAKEA IEKVNGVQLG SKNVYVGPFI 180
181 KKSERATNDT
|
| Detection Method: |  |
| Confidence: | 59.045757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.24263873726102 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.04854882388951 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [191-338] |
1 11 21 31 41 51
| | | | | |
1 KFTNLYVKNF PDSVTETHLR QLFNPYGEIT SMIVKMDNKN RKFCFINYAD AESAKNAMDN 60
61 LNGKKITDDG QIDETYDPKK EEATASTSGA ANQTTGTDAD KTDKNDKNNK ADKNEKGDSS 120
121 NANNNATATG ATTTDTTTTP GETTTTTA
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 1sjrA |
| Description: | NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.24263873726102 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.04854882388951 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [339-439] |
1 11 21 31 41 51
| | | | | |
1 NADSTGANNN NGLSPNTNTS NTTTGSSNNS INLNENNNTA GNNNSTNNNN NSGSSMNNAG 60
61 SAKKDETAAS DCADTPNILY VGPHQSRARR HAILKAKFDN L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [440-525] |
1 11 21 31 41 51
| | | | | |
1 NVENKNKHQG VNLYIKNLDD GIDDIMLREL FEPFGTITSA KVMRDEKEQS KGFGFVCFAS 60
61 QEEANKAVTE MHLKIINGKP LYVGLA
|
| Detection Method: | |
| Confidence: | 23.0 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
|
Region A: Residues: [526-617] |
1 11 21 31 41 51
| | | | | |
1 EKREQRLSRL QQRFRMHPIR HHMNNPLNTP MQYASPQSPQ LQFSQNTLSY GRPVITAFNQ 60
61 NNLISWRHQQ AAQQQAVHQQ AVHQQAAQQQ LN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [618-746] |
1 11 21 31 41 51
| | | | | |
1 FNTNLRGQIN QMRLYTQNNM MNNNLNQNKP NAQLHHNQQY VPNALAQNGQ QQPNLNAAGQ 60
61 HNAQQLQQQG NNQLLNNNMR NMNNRANRNM GNLGNMNNQK QLPLNINNKQ QNAASQANQM 120
121 NHQAQPQGA
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [747-875] |
1 11 21 31 41 51
| | | | | |
1 QAQQKNPQQM QQVPQGNNFK FTAQARNRME LPNKNANKVN TMNNNMNVNF NNNSTLTAAA 60
61 LASAPPSMQK QVLGENLFPL VANYHPTLAG KITGMMLEMD NSELLILLEN EEQLKKKIDE 120
121 ALVVLQKAK
|
| Detection Method: | |
| Confidence: | 35.0 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.11788426448287 | bayes_pls_golite062009 |
| mRNA binding | 4.06818972936809 | bayes_pls_golite062009 |
| nucleic acid binding | 3.78909647605682 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 3.4111148675327 | bayes_pls_golite062009 |
| single-stranded RNA binding | 3.03728178586535 | bayes_pls_golite062009 |
| binding | 2.76167454154417 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.60937924017999 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
