YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|118480065, gi...
Organism:	Bacillus thuringiensis str. Al Hakam
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|118480065, gi....

Description	E-value	Query Range	Subject Range
gi\|89200187, gi\|... - gi\|89200187\|ref\|ZP_01178942.1\| Cysteine desulphurases, SufS [Bacillus cereus subsp. cytotoxis NVH 39...	1.0E-94	[1..405]	[1..405]
gi\|47505669, gi\|... - gi\|47530521\|ref\|YP_021870.1\| aminotransferase, class V [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30265020, gi\|... - gi\|30265020\|ref\|NP_847397.1\| aminotransferase, class V [Bacillus anthracis str. Ames], gi\|30259697\|g... gi\|65316972, gi\|... - gi\|65316972\|ref\|ZP_00389931.1\| COG0520: Selenocysteine lyase [Bacillus anthracis str. A2012], ref\|NP... gi\|229268065, gi... - gi\|229603657\|ref\|YP_002869222.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0248], gi\|22926...	3.0E-94	[1..406]	[1..406]
gi\|218900136, gi... - gi\|218900136\|ref\|YP_002448547.1\| cysteine desulfurase SufS [Bacillus cereus G9842], gi\|218542809\|gb\|... gi\|228910821, gi... - gi\|228910821\|ref\|ZP_04074630.1\| cysteine desulfurase [Bacillus thuringiensis IBL 200], gi\|228848772\|... gi\|228856171, gi... - gi\|228903486\|ref\|ZP_04067611.1\| cysteine desulfurase [Bacillus thuringiensis IBL 4222], gi\|228856171... gi\|228961227, gi... - gi\|228961227\|ref\|ZP_04122847.1\| cysteine desulfurase [Bacillus thuringiensis serovar pakistani str. ... gi\|218233850, gi... - gi\|218233850\|ref\|YP_002369783.1\| cysteine desulfurase SufS [Bacillus cereus B4264], gi\|218161807\|gb\|... gi\|228817483, gi... - gi\|228942149\|ref\|ZP_04104689.1\| cysteine desulfurase [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228784599, gi... - gi\|228975078\|ref\|ZP_04135637.1\| cysteine desulfurase [Bacillus thuringiensis serovar thuringiensis s... gi\|228968099, gi... - gi\|228968099\|ref\|ZP_04129104.1\| cysteine desulfurase [Bacillus thuringiensis serovar sotto str. T040... gi\|229032620, gi... - gi\|229032620\|ref\|ZP_04188584.1\| cysteine desulfurase [Bacillus cereus AH1271], gi\|228728705\|gb\|EEL79... gi\|228981718, gi... - gi\|228981718\|ref\|ZP_04142013.1\| cysteine desulfurase [Bacillus thuringiensis Bt407], gi\|228777830\|gb... gi\|229112426, gi... - gi\|229112426\|ref\|ZP_04241964.1\| cysteine desulfurase [Bacillus cereus Rock1-15], gi\|228671074\|gb\|EEL... gi\|229049673, gi... - gi\|229049673\|ref\|ZP_04194230.1\| cysteine desulfurase [Bacillus cereus AH676], gi\|228722586\|gb\|EEL739... gi\|74491798, gi\|... - gi\|75760714\|ref\|ZP_00740738.1\| Cysteine desulfurase / Selenocysteine lyase [Bacillus thuringiensis ... gi\|228630272, gi... - gi\|229153173\|ref\|ZP_04281352.1\| cysteine desulfurase [Bacillus cereus m1550], gi\|228630272\|gb\|EEK869... gi\|30023021, gi\|... - gi\|30023021\|ref\|NP_834652.1\| cysteine desulfhydrase [Bacillus cereus ATCC 14579], gi\|29898581\|gb\|AAP... gi\|229130239, gi... - gi\|229130239\|ref\|ZP_04259198.1\| cysteine desulfurase [Bacillus cereus BDRD-Cer4], gi\|228653172\|gb\|EE... gi\|228619580, gi... - gi\|229163959\|ref\|ZP_04291899.1\| cysteine desulfurase [Bacillus cereus R309803], gi\|228619580\|gb\|EEK7...	3.0E-94	[1..406]	[1..406]
gi\|218906174, gi... - gi\|218906174\|ref\|YP_002454008.1\| cysteine desulfurase SufS [Bacillus cereus AH820], gi\|218535531\|gb\|... gi\|49332595, gi\|... - gi\|49481039\|ref\|YP_039000.1\| aminotransferase, class V; cysteine desulfhydrase [Bacillus thuringiens... gi\|47556336, gi\|... - gi\|47567018\|ref\|ZP_00237735.1\| MW0797 [Bacillus cereus G9241], gi\|47556336\|gb\|EAL14670.1\| MW0797 [Ba... gi\|195994370, gi... - gi\|196032941\|ref\|ZP_03100354.1\| cysteine desulfurase SufS [Bacillus cereus W], gi\|195994370\|gb\|EDX58... gi\|228823394, gi... - gi\|228936278\|ref\|ZP_04099077.1\| cysteine desulfurase [Bacillus thuringiensis serovar andalousiensis ... gi\|228930004, gi... - gi\|228930004\|ref\|ZP_04093015.1\| cysteine desulfurase [Bacillus thuringiensis serovar pondicheriensis... gi\|228658856, gi... - gi\|229124516\|ref\|ZP_04253701.1\| cysteine desulfurase [Bacillus cereus 95/8201], gi\|228658856\|gb\|EEL1... gi\|228948706, gi... - gi\|228948706\|ref\|ZP_04110984.1\| cysteine desulfurase [Bacillus thuringiensis serovar monterrey BGSC ... gi\|228590239, gi... - gi\|229193262\|ref\|ZP_04320213.1\| cysteine desulfurase [Bacillus cereus ATCC 10876], gi\|228590239\|gb\|E... gi\|228607819, gi... - gi\|229175678\|ref\|ZP_04303186.1\| cysteine desulfurase [Bacillus cereus MM3], gi\|228607819\|gb\|EEK65133...	8.0E-94	[1..406]	[1..406]
gi\|229062649, gi... - gi\|229062649\|ref\|ZP_04199958.1\| cysteine desulfurase [Bacillus cereus AH603], gi\|228716619\|gb\|EEL683... gi\|228747124, gi... - gi\|229014170\|ref\|ZP_04171291.1\| cysteine desulfurase [Bacillus mycoides DSM 2048], gi\|228747124\|gb\|E... gi\|229169703, gi... - gi\|229169703\|ref\|ZP_04297403.1\| cysteine desulfurase [Bacillus cereus AH621], gi\|228613742\|gb\|EEK708... gi\|228647675, gi... - gi\|229135809\|ref\|ZP_04264579.1\| cysteine desulfurase [Bacillus cereus BDRD-ST196], gi\|228647675\|gb\|E... gi\|163864893, gi... - gi\|89206044\|ref\|ZP_01184607.1\| Cysteine desulphurases, SufS [Bacillus weihenstephanensis KBAB4], gi\|...	2.0E-93	[1..406]	[1..406]
CSD_BACSU - Probable cysteine desulfurase OS=Bacillus subtilis GN=csd PE=3 SV=1 gi\|221324740 - gi\|221324740\|ref\|ZP_03606034.1\| cysteine desulfurase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221315541 - gi\|221315541\|ref\|ZP_03597346.1\| cysteine desulfurase [Bacillus subtilis subsp. subtilis str. NCIB 36... gi\|221320456 - gi\|221320456\|ref\|ZP_03601750.1\| cysteine desulfurase [Bacillus subtilis subsp. subtilis str. JH642] SUFS_BACSU - Cysteine desulfurase SufS OS=Bacillus subtilis (strain 168) GN=sufS PE=1 SV=1	2.0E-92	[1..405]	[1..405]
gi\|52787141, gi\|... - gi\|52787141\|ref\|YP_092970.1\| Csd [Bacillus licheniformis ATCC 14580], gi\|52349643\|gb\|AAU42277.1\| Csd...	1.0E-91	[1..405]	[1..405]
gi\|56381370, gi\|... - gi\|56421528\|ref\|YP_148846.1\| cysteine desulfurase [Geobacillus kaustophilus HTA426], gi\|56381370\|dbj...	8.0E-91	[1..405]	[1..405]
gi\|86605110, gi\|... - gi\|86605110\|ref\|YP_473873.1\| SufS family cysteine desulfurase [Synechococcus sp. JA-3-3Ab], gi\|86553... gi\|86605110 - gi\|86605110\|ref\|YP_473873.1\| cysteine desulfurase, SufS family [Cyanobacteria bacterium Yellowstone ...	1.0E-89	[6..406]	[25..428]
gi\|42519066, gi\|... - gi\|42519066\|ref\|NP_964996.1\| selenocysteine lyase [Lactobacillus johnsonii NCC 533], gi\|41583353\|gb\|... gi\|31076070 - gi\|31076070\|emb\|CAD68973.1\| selenocysteine lyase [Lactobacillus johnsonii]	4.0E-89	[1..404]	[4..410]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIHEIRKQF PILDQKVNGK QLVYFDSAAT SQKPIQVIET LERYYKEYNS NVHRGVHTLG  60
   61 TKATDAYEGA REKVRKFINA KSMEEIIFTR GTTTALNTVA ASYGLENVKE GDEIVISYME 120
  121 HHSNIIPWQQ VAKKTGATLK YLPLQPDGTI SIEDARQTIT PNTKIVSIMY VSNVLGTINP 180
  181 VKEIGAIAHE NGAIMVVDGA QSTPHMKVDV QDLNCDFYAL SAHKMCGPTG IGVLYGKKEL 240
  241 LNNMEPIEFG GEMIDFVDLQ ESTWKELPWK FEAGTPIIGN AIGLGAAIDF LEEIGLDNIE 300
  301 KHEHELAQYA LERLSEVDGV TIYGPKHRAG LVTFNIEDVH PHDVATVLDV EGIAVRAGHH 360
  361 CAQPLMKWLK ASSTARASFY LYNTKEEIDT FVESLIKTKE YFTNVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	1t3iA
Description:	Structure of slr0077/SufS, the Essential Cysteine Desulfurase from Synechocystis PCC 6803
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glycine dehydrogenase (decarboxylating) activity	2.82824364293374	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	2.82824364293374	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
cysteine desulfurase activity	0.67931229352972	bayes_pls_golite062009
binding	0.653761928322079	bayes_pls_golite062009
cystathionine gamma-lyase activity	0.505859361763689	bayes_pls_golite062009
cystathionine beta-lyase activity	0.27933426619091	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	0.234399054481664	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.13686553668007	bayes_pls_golite062009
nucleic acid binding	0.013097682076602	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: