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Protein Overview: gi|42519066, gi|...

General Information:
Name(s) found: gi|42519066 [NCBI NR]
gi|41583353 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|42519066|ref|NP_964996.1| selenocysteine lyase [Lactobacillus johnsonii NCC 533] [NCBI NR]
  • gi|41583353|gb|AAS08962.1| selenocysteine lyase [Lactobacillus johnsonii NCC 533] [NCBI NR]
    • Organism: Lactobacillus johnsonii NCC 533
    Length: 412 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLNTEKIK QDFPIFNQKI NDETLVYLDN AATSQIPKFV EEKVRDFNEK ERANVHRGVH  60
   61 ALGLRATNQY ESSRQKVANF IGANNAKEVI FTSGCTDSLN LVAASFGEQN IQAGDEILVS 120
  121 IMEHHSNLLP WQQLAKRKQA KLNFIEINSD GLLDIKNLKS KINSKTKIVA LTHVSNVLGT 180
  181 INPIKELTDL AHEKGAIVVV DGAQAVGHFP IDVAELNVDF YAFSGHKMFA PTGIGVLYGK 240
  241 KDLLDKMQPY RLGGEMIANV TREGATWAEV PYKFEAGTPN IAGAIGLGAA IDYLQSLDFE 300
  301 LIQKHEQELT SYALEKLKNV SGLTIYGPQK SNGRIGVISF NLKNIHPHDL ATALDLNGIE 360
  361 VRAGHHCAQP LMASLNTEST VRASLSIYNT KDDIDKLVSS LHEAKEFFSE FR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..412] PSI-BLAST 81.522879 Structure of slr0077/SufS, the Essential Cysteine Desulfurase from Synechocystis PCC 6803

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glycine dehydrogenase (decarboxylating) activity
    		•  3.40354781002256 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  3.40354781002256 bayes_pls_golite062009
  • transferase activity
    		•  2.59075614411581 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  1.62166853560902 bayes_pls_golite062009
  • cysteine desulfurase activity
    		•  1.30923778688541 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • carbon-sulfur lyase activity
    		•  0.698312655247044 bayes_pls_golite062009
  • 5-aminolevulinate synthase activity
    		•  0.523223426448441 bayes_pls_golite062009
  • cystathionine gamma-lyase activity
    		•  0.505859361763689 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.50269055590758 bayes_pls_golite062009
  • binding
    		•  0.49769115245722 bayes_pls_golite062009
  • cystathionine beta-lyase activity
    		•  0.27933426619091 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.271623203801431 bayes_pls_golite062009
  • O-phospho-L-serine:2-oxoglutarate aminotransferase activity
    		•  0.234399054481664 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.186646089509162 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  0.0450490929307473 bayes_pls_golite062009
  • DNA binding
    		•  0.0281750086102144 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle