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View Structure Prediction Details

Protein: gi|125559900
Organism: Oryza sativa Indica Group
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125559900.

Description E-value Query
Range
Subject
Range
gi|145328250, gi... - gi|30678012|ref|NP_849927.1| nucleic acid binding [Arabidopsis thaliana], gi|30678010|ref|NP_178361....
192.0 [0..1] [296..5]

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Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDLSVEELA SNLSTYKEQL REVRKIIKEK NDDPGISEYL DMEKELQEVI TLTEELLATA  60
   61 NQSGNTQNDV GLSPPNYSSG LQSEALDDPS QSHEKFAVGT KVQAVWSEDG EWYNATIEEL 120
  121 TENGYYVSFE GWGNKEEVDP ANVRSLEEEA ADALRQAEKE AEATKMAIKR KIEQAATSDF 180
  181 QMRSLPTKLR IDPNDPEDVK ATKRKKIHAF KSKARFEQLE FAQNKRQNAW QQFQTTKGKA 240
  241 KKVGFFSGRK KESIFKSPDD HRGKVGVTGS GKGLTEFQRR EKHLHLKDGS SDALDEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 2hqeA
Description: No description for 2hqeA was found.

Predicted functions:

Term Confidence Notes
transcription regulator activity 3.08306835796752 bayes_pls_golite062009
binding 3.03932294945523 bayes_pls_golite062009
protein binding 2.81959915474598 bayes_pls_golite062009
nucleic acid binding 2.39870293911569 bayes_pls_golite062009
DNA binding 2.20609628916256 bayes_pls_golite062009
transcription repressor activity 1.54356011397295 bayes_pls_golite062009
transcription factor activity 1.48392797294737 bayes_pls_golite062009
transcription factor binding 1.47472377622426 bayes_pls_golite062009
transcription cofactor activity 1.30540808654443 bayes_pls_golite062009
chromatin binding 0.86899475761353 bayes_pls_golite062009
N-methyltransferase activity 0.53946303154276 bayes_pls_golite062009
transcription corepressor activity 0.30405575160278 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.223495463070134 bayes_pls_golite062009
transcription activator activity 0.181941750923533 bayes_pls_golite062009
sequence-specific DNA binding 0.141502107934206 bayes_pls_golite062009
histone methyltransferase activity 0.0975466265461999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle