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View Structure Prediction Details

Protein: gi|125564291
Organism: Oryza sativa Indica Group
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125564291.

Description E-value Query
Range
Subject
Range
gi|71674917, gi|... - gi|71674917|ref|ZP_00672663.1| Ribulose-phosphate 3-epimerase [Trichodesmium erythraeum IMS101], gi|...
199.0 [0..2] [220..4]

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Predicted Domain #1
Region A:
Residues: [1-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAAKIA PSMLSSDFAN LAAEADRMVR LGADWLHMDI MDGHFVPNLT IGAPVIQSLR  60
   61 KHTKAYLDCH LMVTNPSDYV EPLAKAGASG FTFHIEVSRD NWQELIQSIK AKGMRPGVSL 120
  121 RPGTPVEEVF PLVEAENPVE LVLVMTVEPG FGGQKFMPEM MEKVRALRKK YPSLDIEVDG 180
  181 GLGPSTIDVA ASAGANCIVA GSSIFGAAEP GEVISALRKS VEGSQNKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.69897
Match: 1h1yA
Description: D-ribulose-5-phosphate 3-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribulose-phosphate 3-epimerase activity 3.28372503209224 bayes_pls_golite062009
catalytic activity 2.44231061702877 bayes_pls_golite062009
intramolecular oxidoreductase activity 1.86158562896415 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 1.36492964250879 bayes_pls_golite062009
isomerase activity 0.935800409577999 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.764608070506109 bayes_pls_golite062009
orotidine-5'-phosphate decarboxylase activity 0.758594564254247 bayes_pls_golite062009
binding 0.595171555788202 bayes_pls_golite062009
racemase and epimerase activity 0.288948763149344 bayes_pls_golite062009
carboxy-lyase activity 0.1100847613283 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle