| Protein: | gi|114644468 |
| Organism: | Pan troglodytes |
| Length: | 494 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114644468.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-60 | [1..424] | [1..415] |
|
|
6.0E-57 | [1..494] | [1..494] |
|
|
2.0E-55 | [1..494] | [1..494] |
|
|
8.0E-52 | [1..494] | [1..483] |
|
|
2.0E-51 | [1..494] | [1..483] |
|
|
5.0E-51 | [1..494] | [1..483] |
|
|
1.0E-48 | [1..419] | [1..419] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MGDDRPFVCN APGCGQRFTN EDHLAVHKHK HEMTLKFGPA RTDSVIIADQ TPTPTRFLKN 60
61 CEEVGLFNEL ASSFEHEFKK AADEDEKKAR SRTVAKKL
|
| Detection Method: |  |
| Confidence: | 1.06 |
| Match: | 1zr9A |
| Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.5629554787463 | bayes_pls_golite062009 |
| binding | 2.56065593409893 | bayes_pls_golite062009 |
| DNA binding | 2.4518582111042 | bayes_pls_golite062009 |
| transcription regulator activity | 2.37991313341667 | bayes_pls_golite062009 |
| transcription factor activity | 1.5666937639803 | bayes_pls_golite062009 |
| protein binding | 0.975412203442928 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.844177917146674 | bayes_pls_golite062009 |
| transcription activator activity | 0.737716870305362 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.554760811774926 | bayes_pls_golite062009 |
| chromatin binding | 0.429389462184423 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| transcription repressor activity | 0.219901277043559 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.0696202830076269 | bayes_pls_golite062009 |
| transcription factor binding | 0.0236725821766979 | bayes_pls_golite062009 |
|
Region A: Residues: [99-238] |
1 11 21 31 41 51
| | | | | |
1 VAAAGPLDMS LPSTPDIKIK EEEPVEVDSS PPDSPASSPC SPPLKEKEVT PKPVLISTPT 60
61 PTIVRPGSLP LHLGYDPLHP TLPSPTSVIT QAPPSNRQMG SPTGSLPLVM HLANGQTMPV 120
121 LPGPPVQMPS VISLARPVSM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [239-334] |
1 11 21 31 41 51
| | | | | |
1 VPNIPGIPGP PVNSSGSISP SGHPIPSEAK MRLKATLTHQ VSSINGGCGM VVGTASTMVT 60
61 ARPEQSQILI QHPDAPSPAQ PQVSPAQPTP STGGRR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [335-408] |
1 11 21 31 41 51
| | | | | |
1 RRTVDEDPDE RRQRFLERNR AAASRCRQKR KLWVSSLEKK AEELTSQNIQ LSNEVTLLRN 60
61 EVAQLKQLLL AHKD
|
| Detection Method: | |
| Confidence: | 14.221849 |
| Match: | 1t2kD |
| Description: | Structure Of The DNA Binding Domains Of IRF3, ATF-2 and Jun Bound To DNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [409-494] |
1 11 21 31 41 51
| | | | | |
1 CPVTALQKKT QGYLESPKES SEPTGSPAPV IQHSSATAPS NGLSVRSAAE AVATSVLTQM 60
61 ASQRTELSMP IQSHVIMTPQ SQSAGR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
