YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|133728614, gi...
Organism:	Listeria monocytogenes FSL N3-165
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|133728614, gi....

Description	E-value	Query Range	Subject Range
RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsI PE=3 SV=1 gi\|254825043 - gi\|254825043\|ref\|ZP_05230044.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-194] gi\|254854199 - gi\|254854199\|ref\|ZP_05243547.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL R2-503] gi\|254877846 - gi\|254877846\|ref\|ZP_05250556.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-071] gi\|254992717 - gi\|254992717\|ref\|ZP_05274907.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-064] gi\|255022865 - gi\|255022865\|ref\|ZP_05294851.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-208] gi\|255520579 - gi\|255520579\|ref\|ZP_05387816.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-175] RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua GN=rpsI PE=3 SV=1 RS9_LISMF - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsI PE=3 SV=1 RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpsI PE=3 SV=1 RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpsI PE=3 SV=1 gi\|254871298, gi... - gi\|254871298\|ref\|ZP_05244008.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL N1-017], gi\|153... gi\|254931134, gi... - gi\|254931134\|ref\|ZP_05264493.1\| 30S ribosomal protein S9 [Listeria monocytogenes HPB2262], gi\|153204... gi\|47018096, gi\|... - gi\|47093536\|ref\|ZP_00231297.1\| ribosomal protein S9 [Listeria monocytogenes str. 4b H7858], gi\|47018... RS9_LISMH - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsI PE=3 SV=1	196.0	[0..1]	[130..1]
RS9_BACHD - 30S ribosomal protein S9 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RS9_BACHD - 30S ribosomal protein S9 OS=Bacillus halodurans GN=rpsI PE=3 SV=1	195.0	[0..1]	[130..1]
RS9_BACSK - 30S ribosomal protein S9 OS=Bacillus clausii (strain KSM-K16) GN=rpsI PE=3 SV=1	192.0	[0..1]	[130..1]
RS9_CALS4 - 30S ribosomal protein S9 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / J... RS9_THETN - 30S ribosomal protein S9 OS=Thermoanaerobacter tengcongensis GN=rpsI PE=3 SV=1	192.0	[0..1]	[130..1]
gi\|89084932, gi\|... - gi\|89100311\|ref\|ZP_01173176.1\| 30S ribosomal protein S9 [Bacillus sp. NRRL B-14911], gi\|89084932\|gb\|...	190.0	[0..1]	[130..1]
RS9_OCEIH - 30S ribosomal protein S9 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE... RS9_OCEIH - 30S ribosomal protein S9 OS=Oceanobacillus iheyensis GN=rpsI PE=3 SV=1	190.0	[0..1]	[130..1]
RS9_CARHZ - 30S ribosomal protein S9 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	190.0	[0..1]	[130..1]
RS9_CLOTH - 30S ribosomal protein S9 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N... gi\|196196381, gi... - gi\|196254199\|ref\|ZP_03152767.1\| ribosomal protein S9 [Clostridium thermocellum DSM 4150], gi\|1961963...	189.0	[0..1]	[130..1]
gi\|228898897, gi... - gi\|228898897\|ref\|ZP_04063179.1\| 30S ribosomal protein S9 [Bacillus thuringiensis IBL 4222], gi\|22886... RS9_BACC3 - 30S ribosomal protein S9 OS=Bacillus cereus (strain 03BB102) GN=rpsI PE=3 SV=1 gi\|228846819, gi... - gi\|228912883\|ref\|ZP_04076530.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar pulsiensis ... gi\|228853756, gi... - gi\|228905941\|ref\|ZP_04069838.1\| 30S ribosomal protein S9 [Bacillus thuringiensis IBL 200], gi\|228853... gi\|228834319, gi... - gi\|228925397\|ref\|ZP_04088493.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar pondicherie... RS9_BACHK - 30S ribosomal protein S9 OS=Bacillus thuringiensis subsp. konkukian GN=rpsI PE=3 SV=1 gi\|228919094, gi... - gi\|228919094\|ref\|ZP_04082473.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar huazhongens... gi\|228937447, gi... - gi\|228937447\|ref\|ZP_04100093.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar berliner AT... gi\|228828074, gi... - gi\|228931646\|ref\|ZP_04094552.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar andalousien... gi\|228809043, gi... - gi\|228950692\|ref\|ZP_04112826.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar kurstaki st... gi\|228815782, gi... - gi\|228943949\|ref\|ZP_04106334.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar monterrey B... gi\|47553080, gi\|... - gi\|47570256\|ref\|ZP_00240907.1\| ribosomal protein S9 [Bacillus cereus G9241], gi\|47553080\|gb\|EAL11480... gi\|228796502, gi... - gi\|228963244\|ref\|ZP_04124413.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar sotto str. ... RS9_BACC1 - 30S ribosomal protein S9 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpsI PE=3 SV=1 gi\|228956585, gi... - gi\|228956585\|ref\|ZP_04118381.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar pakistani s... gi\|228976903, gi... - gi\|228976903\|ref\|ZP_04137315.1\| 30S ribosomal protein S9 [Bacillus thuringiensis Bt407], gi\|22878287... gi\|228789442, gi... - gi\|228970333\|ref\|ZP_04130992.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar thuringiens... gi\|228989352, gi... - gi\|228989352\|ref\|ZP_04149343.1\| 30S ribosomal protein S9 [Bacillus pseudomycoides DSM 12442], gi\|228... gi\|228776389, gi... - gi\|228983399\|ref\|ZP_04143612.1\| 30S ribosomal protein S9 [Bacillus thuringiensis serovar tochigiensi... gi\|228758123, gi... - gi\|229003160\|ref\|ZP_04161006.1\| 30S ribosomal protein S9 [Bacillus mycoides Rock1-4], gi\|228758123\|g... gi\|228764264, gi... - gi\|228995535\|ref\|ZP_04155203.1\| 30S ribosomal protein S9 [Bacillus mycoides Rock3-17], gi\|228764264\|... gi\|228727346, gi... - gi\|229041049\|ref\|ZP_04189812.1\| 30S ribosomal protein S9 [Bacillus cereus AH676], gi\|228727346\|gb\|EE... gi\|228733380, gi... - gi\|229027992\|ref\|ZP_04184145.1\| 30S ribosomal protein S9 [Bacillus cereus AH1271], gi\|228733380\|gb\|E... gi\|229074205, gi... - gi\|229074205\|ref\|ZP_04207251.1\| 30S ribosomal protein S9 [Bacillus cereus Rock4-18], gi\|228708975\|gb... gi\|229067909, gi... - gi\|229067909\|ref\|ZP_04201226.1\| 30S ribosomal protein S9 [Bacillus cereus F65185], gi\|228715268\|gb\|E... gi\|228699897, gi... - gi\|229083464\|ref\|ZP_04215812.1\| 30S ribosomal protein S9 [Bacillus cereus Rock3-44], gi\|228699897\|gb... gi\|228705860, gi... - gi\|229077446\|ref\|ZP_04210094.1\| 30S ribosomal protein S9 [Bacillus cereus Rock4-2], gi\|228705860\|gb\|... RS9_BACHK - 30S ribosomal protein S9 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpsI PE=3 SV=1 gi\|228688609, gi... - gi\|229094866\|ref\|ZP_04225871.1\| 30S ribosomal protein S9 [Bacillus cereus Rock3-29], gi\|228688609\|gb... RS9_BACCZ - 30S ribosomal protein S9 OS=Bacillus cereus (strain ZK / E33L) GN=rpsI PE=3 SV=1 gi\|228694114, gi... - gi\|229089275\|ref\|ZP_04220556.1\| 30S ribosomal protein S9 [Bacillus cereus Rock3-42], gi\|228694114\|gb... RS9_BACAH - 30S ribosomal protein S9 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsI PE=3 SV=1 RS9_BACCR - 30S ribosomal protein S9 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NC... gi\|228675679, gi... - gi\|229107830\|ref\|ZP_04237466.1\| 30S ribosomal protein S9 [Bacillus cereus Rock1-15], gi\|228675679\|gb... gi\|228682522, gi... - gi\|229100943\|ref\|ZP_04231747.1\| 30S ribosomal protein S9 [Bacillus cereus Rock3-28], gi\|228682522\|gb... gi\|229119806, gi... - gi\|229119806\|ref\|ZP_04249067.1\| 30S ribosomal protein S9 [Bacillus cereus 95/8201], gi\|228663707\|gb\|... gi\|228669691, gi... - gi\|229113820\|ref\|ZP_04243255.1\| 30S ribosomal protein S9 [Bacillus cereus Rock1-3], gi\|228669691\|gb\|... gi\|229136990, gi... - gi\|229136990\|ref\|ZP_04265617.1\| 30S ribosomal protein S9 [Bacillus cereus BDRD-ST26], gi\|228646528\|g... gi\|229125661, gi... - gi\|229125661\|ref\|ZP_04254693.1\| 30S ribosomal protein S9 [Bacillus cereus BDRD-Cer4], gi\|228657853\|g... gi\|229148553, gi... - gi\|229148553\|ref\|ZP_04276809.1\| 30S ribosomal protein S9 [Bacillus cereus m1550], gi\|228634969\|gb\|EE... gi\|229142950, gi... - gi\|229142950\|ref\|ZP_04271391.1\| 30S ribosomal protein S9 [Bacillus cereus BDRD-ST24], gi\|228640571\|g... gi\|229159317, gi... - gi\|229159317\|ref\|ZP_04287341.1\| 30S ribosomal protein S9 [Bacillus cereus R309803], gi\|228624209\|gb\|... gi\|228629603, gi... - gi\|229153922\|ref\|ZP_04282052.1\| 30S ribosomal protein S9 [Bacillus cereus ATCC 4342], gi\|228629603\|g... gi\|229176744, gi... - gi\|229176744\|ref\|ZP_04304148.1\| 30S ribosomal protein S9 [Bacillus cereus 172560W], gi\|228606787\|gb\|... gi\|228612535, gi... - gi\|229170995\|ref\|ZP_04298596.1\| 30S ribosomal protein S9 [Bacillus cereus MM3], gi\|228612535\|gb\|EEK6... gi\|228595103, gi... - gi\|229188429\|ref\|ZP_04315477.1\| 30S ribosomal protein S9 [Bacillus cereus ATCC 10876], gi\|228595103\|... gi\|229182538, gi... - gi\|229182538\|ref\|ZP_04309789.1\| 30S ribosomal protein S9 [Bacillus cereus BGSC 6E1], gi\|228600993\|gb... gi\|229194534, gi... - gi\|229194534\|ref\|ZP_04321337.1\| 30S ribosomal protein S9 [Bacillus cereus m1293], gi\|228589000\|gb\|EE... RS9_BACC4 - 30S ribosomal protein S9 OS=Bacillus cereus (strain B4264) GN=rpsI PE=3 SV=1 RS9_BACC2 - 30S ribosomal protein S9 OS=Bacillus cereus (strain G9842) GN=rpsI PE=3 SV=1 gi\|206743755, gi... - gi\|206978042\|ref\|ZP_03238927.1\| 30S ribosomal protein S9 [Bacillus cereus H3081.97], gi\|206743755\|gb... RS9_BACC7 - 30S ribosomal protein S9 OS=Bacillus cereus (strain AH187) GN=rpsI PE=3 SV=1 RS9_BACC0 - 30S ribosomal protein S9 OS=Bacillus cereus (strain AH820) GN=rpsI PE=3 SV=1 RS9_BACCQ - 30S ribosomal protein S9 OS=Bacillus cereus (strain Q1) GN=rpsI PE=3 SV=1 gi\|196022993, gi... - gi\|196046248\|ref\|ZP_03113475.1\| ribosomal protein S9 [Bacillus cereus 03BB108], gi\|196022993\|gb\|EDX6... gi\|206732836, gi... - gi\|206972262\|ref\|ZP_03233209.1\| 30S ribosomal protein S9 [Bacillus cereus AH1134], gi\|206732836\|gb\|E... gi\|195991382, gi... - gi\|196036013\|ref\|ZP_03103414.1\| ribosomal protein S9 [Bacillus cereus W], gi\|195991382\|gb\|EDX55349.1... gi\|196028039, gi... - gi\|196041104\|ref\|ZP_03108400.1\| ribosomal protein S9 [Bacillus cereus NVH0597-99], gi\|196028039\|gb\|E...	188.0	[0..1]	[130..1]
RS9_THEP3 - 30S ribosomal protein S9 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsI PE... gi\|241904306, gi... - gi\|241904306\|ref\|ZP_04789008.1\| ribosomal protein S9 [Thermoanaerobacter brockii subsp. finnii Ako-1... gi\|242230680, gi... - gi\|242257836\|ref\|ZP_04802686.1\| ribosomal protein S9 [Thermoanaerobacter sp. X513], gi\|242230680\|gb\|... RS9_THEPX - 30S ribosomal protein S9 OS=Thermoanaerobacter sp. (strain X514) GN=rpsI PE=3 SV=1	187.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVQYYGTG RRKSSVARVR LVPGDGKIVI NNRDWEDYIP FAALREVIKQ PLVATETLGN  60
   61 YDVLVNVHGG GYTGQAGAIR HGVARALLQV APEYRPALKS AGLLTRDSRM KERKKPGLKG 120
  121 ARRAPQFSKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1vs5I
Description:	No description for 1vs5I was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.32829196949019	bayes_pls_golite062009
structural molecule activity	6.75880680396215	bayes_pls_golite062009
3'-5'-exoribonuclease activity	1.56111033008721	bayes_pls_golite062009
RNA binding	1.40868766468494	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.35935222635763	bayes_pls_golite062009
exoribonuclease activity	1.31205157616894	bayes_pls_golite062009
3'-5' exonuclease activity	1.10842504252923	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
nucleic acid binding	0.555181608481691	bayes_pls_golite062009
binding	0.478154009944658	bayes_pls_golite062009
transcription regulator activity	0.368412900600617	bayes_pls_golite062009
ribonuclease activity	0.19921800066954	bayes_pls_golite062009
DNA binding	0.0880977286684361	bayes_pls_golite062009
mRNA binding	0.0491645692672305	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	6.9430052008157E-5	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: