YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114614532, gi...
Organism:	Pan troglodytes
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114614532, gi....

Description	E-value	Query Range	Subject Range
GBG1_BOVIN - Guanine nucleotide-binding protein G(T) subunit gamma-T1 OS=Bos taurus GN=GNGT1 PE=1 SV=2	2.0E-21	[1..74]	[1..74]
gi\|109067491, gi... - gi\|109067491\|ref\|XP_001098610.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein...	2.0E-21	[1..74]	[1..74]
gi\|47221283 - gi\|47221283\|emb\|CAG13219.1\| unnamed protein product [Tetraodon nigroviridis]	3.0E-21	[8..73]	[20..85]
GBG1_MOUSE - Guanine nucleotide-binding protein G(T) subunit gamma-T1 OS=Mus musculus GN=Gngt1 PE=1 SV=3	3.0E-21	[1..74]	[1..74]
gi\|224051979 - gi\|224051979\|ref\|XP_002200657.1\| PREDICTED: guanine nucleotide binding protein (G protein), gamma 2 ... gi\|542184339\|ref... - PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2-like isoform X3 [Zonotr... gi\|148229228, gi... - gi\|53133963\|emb\|CAG32290.1\| hypothetical protein [Gallus gallus], gi\|148229228\|ref\|NP_001090997.1\| g...	4.0E-21	[8..73]	[5..70]
GBG7_RAT - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Rattus norvegicus GN=Gng7 PE=2 ...	4.0E-21	[9..73]	[4..68]
GNG7 - guanine nucleotide binding protein (G protein), gamma 7 gi\|109122851 - gi\|109122851\|ref\|XP_001098800.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein... gi\|114674554 - gi\|114674554\|ref\|XP_001152049.1\| PREDICTED: guanine nucleotide binding protein (G protein), gamma 7 ... gi\|208968219 - gi\|208968219\|dbj\|BAG73948.1\| FLJ00058 [synthetic construct]	5.0E-21	[9..73]	[4..68]
tr\|G3V2N0\|G3V2N0... - Guanine nucleotide-binding protein subunit gamma OS=Homo sapiens GN=GNG2 PE=3 SV=1, Tax_Id=9606 Gene... gi\|114653023 - gi\|114653023\|ref\|XP_001158267.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	6.0E-21	[8..73]	[44..109]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVINIEDLT EKDKLKMEVD QLKKEVTLER MLVSKCCEEV RDYVEERSGE DPLVKGIPED  60
   61 KNPFKELKGG CVIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1b9xB
Description:	Transducin (heterotrimeric G protein), gamma chain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
GTPase activity	5.98519752009234	bayes_pls_golite062009
angiotensin receptor binding	2.59868793911346	bayes_pls_golite062009
type 1 angiotensin receptor binding	2.59868793911346	bayes_pls_golite062009
signal transducer activity	1.75801578312445	bayes_pls_golite062009
molecular transducer activity	1.75801578312445	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.62723010313037	bayes_pls_golite062009
pyrophosphatase activity	1.55645551527959	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.53805916057226	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.53586893403838	bayes_pls_golite062009
receptor binding	1.45302453757621	bayes_pls_golite062009
binding	1.25375089530994	bayes_pls_golite062009
hydrolase activity	0.489687420983837	bayes_pls_golite062009
protein binding	0.399162858691971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: