YRC Public Data Repository - Protein Structure Prediction

Protein:	SUMO3_MOUSE
Organism:	Mus musculus
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUMO3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114676157 - gi\|114676157\|ref\|XP_001135183.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	147.0	[0..14]	[110..91]
gi\|73986078 - gi\|73986078\|ref\|XP_533870.2\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusion p...	147.0	[0..13]	[110..55]
gi\|109124042 - gi\|109124042\|ref\|XP_001115463.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	145.0	[0..4]	[110..36]
gi\|94385938 - gi\|94385938\|ref\|XP_001004010.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusio...	145.0	[0..7]	[110..27]
gi\|113431898 - gi\|113431898\|emb\|CAJ90900.1\| ubiquitin/ribosomal fusion protein homologue [Salmo salar]	144.0	[0..14]	[110..7]
gi\|13569612 - gi\|13569612\|gb\|AAK31162.1\| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo sapiens]	144.0	[0..13]	[110..10]
gi\|66362872 - gi\|66362872\|ref\|XP_628402.1\| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II] gi\|46229800 - gi\|46229800\|gb\|EAK90618.1\| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II]	141.0	[0..15]	[110..3]
gi\|23619579, gi\|... - gi\|23619579\|ref\|NP_705541.1\| ubiquitin/ribosomal fusion protein uba52 homologue, putative [Plasmodiu...	141.0	[0..17]	[110..1]
gi\|67614873 - gi\|67614873\|ref\|XP_667394.1\| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis TU502] gi\|54658521 - gi\|54658521\|gb\|EAL37158.1\| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis]	140.0	[0..17]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEKPKEGV KTENDHINLK VAGQDGSVVQ FKIKRHTPLS KLMKAYCERQ GLSMRQIRFR  60
   61 FDGQPINETD TPAQLEMEDE DTIDVFQQQT GGSASRGSVP TPNRCPDLCY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	2awtA
Description:	No description for 2awtA was found.

Predicted functions:

Term	Confidence	Notes
SUMO ligase activity	3.84399877513864	bayes_pls_golite062009
small conjugating protein ligase activity	3.71144418714309	bayes_pls_golite062009
ubiquitin-protein ligase activity	2.89535476350045	bayes_pls_golite062009
binding	2.786655943372	bayes_pls_golite062009
acid-amino acid ligase activity	2.72499875710239	bayes_pls_golite062009
transcription regulator activity	2.21955949922709	bayes_pls_golite062009
protein tag	2.15059229834935	bayes_pls_golite062009
nucleic acid binding	1.9984951714209	bayes_pls_golite062009
protein binding	1.86841453215444	bayes_pls_golite062009
DNA binding	1.86539227646379	bayes_pls_golite062009
cytoskeletal protein binding	1.73491621577173	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.34783881509181	bayes_pls_golite062009
tubulin binding	0.984710328639471	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.753885975469065	bayes_pls_golite062009
microtubule binding	0.721760846967789	bayes_pls_golite062009
signal transducer activity	0.65988002090613	bayes_pls_golite062009
molecular transducer activity	0.65988002090613	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.62324312069889	bayes_pls_golite062009
structural constituent of ribosome	0.599634454232833	bayes_pls_golite062009
structural molecule activity	0.576819726104993	bayes_pls_golite062009
structure-specific DNA binding	0.570143717979967	bayes_pls_golite062009
protein kinase activity	0.325253662829604	bayes_pls_golite062009
single-stranded DNA binding	0.249928925871521	bayes_pls_golite062009
enzyme binding	0.240262781026149	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0871262449740772	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.0816453389356582	bayes_pls_golite062009
kinase activity	0.0363894273406812	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: