YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5H_MOUSE
Organism:	Mus musculus
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5H_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|16741459 - gi\|16741459\|gb\|AAH16547.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d [Mus m...	275.0	[0..1]	[161..1]
ATP5H_RAT - ATP synthase subunit d, mitochondrial OS=Rattus norvegicus GN=Atp5h PE=1 SV=3	270.0	[0..1]	[161..1]
gi\|109118139 - gi\|109118139\|ref\|XP_001092326.1\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial ...	256.0	[0..1]	[161..1]
gi\|114670390 - gi\|114670390\|ref\|XP_001138674.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,... ATP5H - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	255.0	[0..1]	[161..1]
ATP5H_BOVIN - ATP synthase subunit d, mitochondrial OS=Bos taurus GN=ATP5H PE=1 SV=2	252.0	[0..1]	[161..1]
gi\|57108097 - gi\|57108097\|ref\|XP_535426.1\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	251.0	[0..1]	[161..1]

Back

Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRKLALKT IDWVSFVEVM PQNQKAIGNA LKSWNETFHA RLASLSEKPP AIDWAYYRAN  60
   61 VAKPGLVDDF EKKYNALKIP VPEDKYTALV DQEEKEDVKS CAEFVSGSQL RIQEYEKQLE 120
  121 KMRNIIPFDQ MTIDDLNEIF PETKLDKKKY PYWPHQPIEN L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.39794
Match:	2clyB
Description:	No description for 2clyB was found.

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	10.7183160834782	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	8.97596713760839	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.90597892679083	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	6.1125687610116	bayes_pls_golite062009
cation transmembrane transporter activity	4.22395118867988	bayes_pls_golite062009
ion transmembrane transporter activity	4.14778831333857	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.77987144158593	bayes_pls_golite062009
transporter activity	2.17343635031853	bayes_pls_golite062009
transmembrane transporter activity	2.0392528625188	bayes_pls_golite062009
substrate-specific transporter activity	1.96541207125766	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.93539847256373	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.72052571762598	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.46705756526037	bayes_pls_golite062009
pyrophosphatase activity	1.40154328896132	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.38474091052441	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.38237845949685	bayes_pls_golite062009
ATPase activity	1.3807805914732	bayes_pls_golite062009
primary active transmembrane transporter activity	0.799499441674651	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.793051451246261	bayes_pls_golite062009
active transmembrane transporter activity	0.769001631826172	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.763828049556794	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.760339273021048	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.760299009322944	bayes_pls_golite062009
catalytic activity	0.534516847146079	bayes_pls_golite062009
hydrolase activity	0.463638383758448	bayes_pls_golite062009
ATPase activity, coupled	0.334578049419841	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: