| Protein: | VAX2_MOUSE |
| Organism: | Mus musculus |
| Length: | 292 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAX2_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
165.0 | [0..1] | [292..1] |
|
|
149.0 | [0..1] | [275..1] |
|
|
148.0 | [0..1] | [284..1] |
|
|
148.0 | [0..1] | [284..1] |
|
|
147.0 | [0..1] | [284..1] |
|
|
136.0 | [0..3] | [282..138] |
|
|
133.0 | [0..1] | [290..1] |
|
|
132.0 | [0..3] | [255..149] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MGDGGAERDR GPKRREEPGG RSGRHGEHRG AEDLRADTGS ASPREIAGTS ASSPAGSRES 60
61 GGDSDGQQAL GETDHCRRIL VRDAKGTIRE IVLPKGLDLD RPKRTRTSFT AEQLYRLEME 120
121 FQRCQYVVGR ERTELARQLN LSETQVKVWF QNRRTKQKKD QSRDL
|
| Detection Method: |  |
| Confidence: | 23.522879 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
|
Region A: Residues: [166-292] |
1 11 21 31 41 51
| | | | | |
1 EKRASSSASE AFATSNVLRL LEQGRLLSVP RAPSLLALTP GLPGLPASHR GTSLVDPRNS 60
61 SPRLNPMPSA SASSPLPPPL PAICFSSAPL LDLPAGYKLG SSAFEPYSRL EQQKVGSPGQ 120
121 SDKKADI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
