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View Structure Prediction Details

Protein: ID4_MOUSE
Organism: Mus musculus
Length: 161 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ID4_MOUSE.

Description E-value Query
Range		 Subject
Range
gi|27463072, gi|... - gi|28212236|ref|NP_783172.1| inhibitor of DNA binding 4 [Rattus norvegicus], gi|27463072|gb|AAO15695...
 116.0 [0..1] [161..1]
gi|109069742 - gi|109069742|ref|XP_001098022.1| PREDICTED: inhibitor of DNA binding 4, dominant negative helix-loop...
tr|C8ZLJ3|C8ZLJ3_PIG - Inhibitor of DNA binding 4, dominant negative helix-loop-helix protein OS=Sus scrofa GN=ID4 PE=4 SV=...
ID4 - inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
 116.0 [0..1] [161..1]
gi|16611800 - gi|16611800|gb|AAL27367.1| myogenic factor 5 [Equus caballus]
 115.0 [0..15] [160..48]
gi|62869863 - gi|62869863|gb|AAY18082.1| myogenic factor MyoD1 [Hippoglossus hippoglossus]
 113.0 [0..14] [157..46]
gi|37675391 - gi|37675391|gb|AAQ97204.1| MyoD [Sternopygus macrurus]
 113.0 [0..11] [158..45]
ID4_PIG - DNA-binding protein inhibitor ID-4 OS=Sus scrofa GN=ID4 PE=2 SV=1
 113.0 [0..1] [161..1]
MYF5_BOVIN - Myogenic factor 5 OS=Bos taurus GN=MYF5 PE=2 SV=1
 111.0 [0..12] [160..45]
gi|185136362, gi... - gi|41581187|emb|CAF02093.1| myoblast determination protein 1 [Salmo salar], gi|30141478|emb|CAD89607...
 111.0 [0..16] [158..50]
gi|16755891 - gi|16755891|gb|AAL28132.1|AF434668_1 myogenic factor-5 [Ovis aries]
 111.0 [0..12] [160..12]

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Predicted Domain #1
Region A:
Residues: [1-161] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVSPVRPS GRKAPSGCGG GELALRCLAE HGHSLGGSAA AAAAAAAARC KAAEAAADEP  60
   61 ALCLQCDMND CYSRLRRLVP TIPPNKKVSK VEILQHVIDY ILDLQLALET HPALLRQPPP 120
  121 PAPPLHPAGA CPVAPPRTPL TALNTDPAGA VNKQGDSILC R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.221849
Match: 1nkpA
Description: Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 5.38658950816179 bayes_pls_golite062009
DNA binding 5.18654839258297 bayes_pls_golite062009
nucleic acid binding 5.05768805749761 bayes_pls_golite062009
transcription factor activity 4.78039531631248 bayes_pls_golite062009
binding 3.81829206350975 bayes_pls_golite062009
RNA polymerase II transcription factor activity 3.39500382187264 bayes_pls_golite062009
protein binding 2.64975291677725 bayes_pls_golite062009
transcription factor binding 2.61163564741984 bayes_pls_golite062009
transcription repressor activity 2.58751248599889 bayes_pls_golite062009
transcription activator activity 2.5495467409976 bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding 2.42306484786159 bayes_pls_golite062009
sequence-specific DNA binding 2.31910036997977 bayes_pls_golite062009
transcription corepressor activity 2.03674713048499 bayes_pls_golite062009
transcription cofactor activity 1.52770895937238 bayes_pls_golite062009
promoter binding 0.8576109846276 bayes_pls_golite062009
protein heterodimerization activity 0.53175615551166 bayes_pls_golite062009
transcription coactivator activity 0.3513586903977 bayes_pls_golite062009
protein dimerization activity 0.20674648626116 bayes_pls_golite062009
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