| Protein: | VMS1_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 600 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMS1_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
256.0 | [0..110] | [599..239] |
|
|
251.0 | [0..164] | [579..533] |
|
|
249.0 | [0..181] | [577..1105] |
|
|
247.0 | [0..96] | [591..6] |
|
|
245.0 | [0..86] | [598..164] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MGDISKHNIF SLPEDILAKL ELREEYSVEE KTDSANLSNQ GDIVDSTQKN ISSCVNCQID 60
61 NLHTLDERKS HIKSDWHRFN TKRKITKLPP VSQDEFESII EDLPESLSGS ESETNSESEE 120
121 DNFQIEKAFK QSLNIGKVDS ADENNNQRTN SPLTWFQLSN ASAE
|
| Detection Method: |  |
| Confidence: | 3.5 |
| Match: | 1zu1A |
| Description: | Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.85972242708612 | bayes_pls_golite062009 |
| transcription regulator activity | 2.77701617604772 | bayes_pls_golite062009 |
| DNA binding | 2.71411659179983 | bayes_pls_golite062009 |
| binding | 1.97525193898847 | bayes_pls_golite062009 |
| transcription factor activity | 1.90143001800384 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06438483834477 | bayes_pls_golite062009 |
| transcription activator activity | 0.888241744617002 | bayes_pls_golite062009 |
| protein binding | 0.721263040163177 | bayes_pls_golite062009 |
| transcription repressor activity | 0.375362589875489 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.226250920465406 | bayes_pls_golite062009 |
| transcription factor binding | 0.191965432731838 | bayes_pls_golite062009 |
| chromatin binding | 0.131327938577204 | bayes_pls_golite062009 |
|
Region A: Residues: [165-600] |
1 11 21 31 41 51
| | | | | |
1 VPTYIGVYKH MFSGNNHITK DLLVQQQNHN RQKPLQLAMF MVGGGHFAAM IASNEFNPRD 60
61 PHVPKVLAQK TIHRYTTRRK QGGSQGAADN TKGNIHSAGS GLRRYNEQAL IKDIQQVFKD 120
121 WGKLLETCDL IFVRAIGSSN RSIFFSQPGA LISPKDPKLR VFPFTTKRAT HSELLRCYKE 180
181 LVTPKISHVD SISIKAQEEE RKRQAEIEKE IRQSRLQEEE RKKKKLAKYT EVIISNLKAS 240
241 NIEAFLEYLR SNDLSINFQF YPKNVHLHTS TPLHYAVTQK NAKLVAKLLR NGADPAMLNG 300
301 NGKTPFEIST GNKEVKDEFL IARHELGESF FDWEAAKVGA PQSREQIQKQ RQKAKTKLEN 360
361 QRRDKERQEE LRRKEAMQKI EEQSKRDYDK LHGEGHSLGI NNVRKVDELQ SLSPEMRMRI 420
421 EREKRAAAAM KRMQTK
|
| Detection Method: | |
| Confidence: | 52.30103 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.58699086730647 | bayes_pls_golite062009 |
| protein binding | 1.41750957807465 | bayes_pls_golite062009 |
| transcription regulator activity | 0.668531056539717 | bayes_pls_golite062009 |
| nucleic acid binding | 0.403559033288365 | bayes_pls_golite062009 |
| DNA binding | 0.186657583240225 | bayes_pls_golite062009 |
| ligase activity | 0.0845684108313678 | bayes_pls_golite062009 |
| transcription factor binding | 0.0182460237384001 | bayes_pls_golite062009 |
