| Protein: | SNAI2_MOUSE |
| Organism: | Mus musculus |
| Length: | 269 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNAI2_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..3] | [268..2561] |
|
|
344.0 | [0..3] | [268..401] |
|
|
338.0 | [0..3] | [268..734] |
|
|
325.0 | [0..3] | [268..723] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MPRSFLVKKH FNASKKPNYS ELDTHTVIIS PYLYESYPIP VIPKPEILTS GAYSPITVWT 60
61 SSAAPLHSPL PSGLSPLTGY SSSLGRVSPP PSSDTSSKDH SG
|
| Detection Method: |  |
| Confidence: | 12.522879 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [103-269] |
1 11 21 31 41 51
| | | | | |
1 SESPISDEEE RLQPKLSDPH AIEAEKFQCN LCNKTYSTFS GLAKHKQLHC DAQSRKSFSC 60
61 KYCDKEYVSL GALKMHIRTH TLPCVCKICG KAFSRPWLLQ GHIRTHTGEK PFSCPHCNRA 120
121 FADRSNLRAH LQTHSDVKKY QCKNCSKTFS RMSLLHKHEE SGCCVAH
|
| Detection Method: | |
| Confidence: | 42.30103 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
