YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109451900, gi...
Organism:	synthetic construct
Length:	569 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109451900, gi....

Description	E-value	Query Range	Subject Range
gi\|60810079 - gi\|60810079\|gb\|AAX36095.1\| gamma-glutamyltransferase 1 [synthetic construct]	0.0	[1..569]	[1..569]
GGT1 - gamma-glutamyltransferase 1	0.0	[1..569]	[1..569]
gi\|114685460, gi... - gi\|114685464\|ref\|XP_001171206.1\| PREDICTED: gamma-glutamyltransferase 1 isoform 14 [Pan troglodytes]...	0.0	[1..569]	[1..569]
GGT1_RAT - Gamma-glutamyltranspeptidase 1 OS=Rattus norvegicus GN=Ggt1 PE=1 SV=4 gi\|57806 - gi\|57806\|emb\|CAA33483.1\| unnamed protein product [Rattus sp.]	0.0	[1..569]	[1..568]
gi\|109093538, gi... - gi\|109093540\|ref\|XP_001094368.1\| PREDICTED: gamma-glutamyltransferase 1 isoform 10 [Macaca mulatta],...	0.0	[1..569]	[1..569]
GGT1_RAT - Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2) (Gamma-glutamyltransferase 1) (GGT 1) (CD224 a...	0.0	[1..569]	[1..568]

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Predicted Domain #1

Region A:
Residues: [1-569]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKLVVLGL LAVVLVLVIV GLCLWLPSAS KEPDNHVYTR AAVAADAKQC SKIGRDALRD  60
   61 GGSAVDAAIA ALLCVGLMNA HSMGIGGGLF LTIYNSTTRK AEVINAREVA PRLAFATMFN 120
  121 SSEQSQKGGL SVAVPGEIRG YELAHQRHGR LPWARLFQPS IQLARQGFPV GKGLAAALEN 180
  181 KRTVIEQQPV LCEVFCRDRK VLREGERLTL PQLADTYETL AIEGAQAFYN GSLTAQIVKD 240
  241 IQAAGGIVTA EDLNNYRAEL IEHPLNISLG DVVLYMPSAP LSGPVLALIL NILKGYNFSR 300
  301 ESVESPEQKG LTYHRIVEAF RFAYAKRTLL GDPKFVDVTE VVRNMTSEFF AAQLRAQISD 360
  361 DTTHPISYYK PEFYTPDDGG TAHLSVVAED GSAVSATSTI NLYFGSKVRS PVSGILFNNE 420
  421 MDDFSSPSIT NEFGVPPSPA NFIQPGKQPL SSMCPTIMVG QDGQVRMVVG AAGGTQITTA 480
  481 TALAIIYNLW FGYDVKRAVE EPRLHNQLLP NVTTVERNID QAVTAALETR HHHTQIASTF 540
  541 IAVVQAIVRT AGGWAAASDS RKGGEPAGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	178.0
Match:	2e0wA
Description:	No description for 2e0wA was found.

Predicted functions:

Term	Confidence	Notes
gamma-glutamyltransferase activity	2.74011689892782	bayes_pls_golite062009
peptidase activity	2.6421095563902	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	2.54551748261349	bayes_pls_golite062009
hydrolase activity	2.49721930187628	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.32542991193149	bayes_pls_golite062009
endopeptidase activity	2.29890628841519	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
binding	0.30185108348797	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0414061586026951	bayes_pls_golite062009
pyrophosphatase activity	0.00597086235697331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: