YRC Public Data Repository - Protein Structure Prediction

Protein:	PSF3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSF3_SCHPO.

Description	E-value	Query Range	Subject Range
PSF3_GIBZE - DNA replication complex GINS protein PSF3 OS=Gibberella zeae GN=PSF3 PE=3 SV=1 PSF3_GIBZE - DNA replication complex GINS protein PSF3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 907...	202.0	[0..1]	[163..1]
gi\|73950325 - gi\|73950325\|ref\|XP_544380.2\| PREDICTED: similar to Y65B4BR.8 [Canis familiaris]	196.0	[0..2]	[163..18]
gi\|125602814, gi... - gi\|215767849\|dbj\|BAH00078.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|125602814\|gb\|...	196.0	[0..2]	[163..3]
PSF3_NEUCR - DNA replication complex GINS protein psf3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS... PSF3_NEUCR - DNA replication complex GINS protein psf-3 OS=Neurospora crassa GN=psf-3 PE=3 SV=1	195.0	[0..1]	[163..1]
PSF3_MOUSE - DNA replication complex GINS protein PSF3 OS=Mus musculus GN=Gins3 PE=2 SV=1	195.0	[0..2]	[163..18]
gi\|166796963, gi... - gi\|62859339\|ref\|NP_001016123.1\| hypothetical protein LOC548877 [Xenopus (Silurana) tropicalis], gi\|1...	195.0	[0..2]	[163..17]
GINS3 - GINS complex subunit 3 (Psf3 homolog)	195.0	[0..2]	[163..18]
gi\|76779920, gi\|... - gi\|76779920\|gb\|AAI06315.1\| Flj13912 protein [Xenopus laevis], gi\|29365483\|dbj\|BAC66460.1\| Psf3 [Xeno...	194.0	[0..2]	[163..17]
gi\|55643959 - gi\|55643959\|ref\|XP_511004.1\| PREDICTED: GINS complex subunit 3 (Psf3 homolog) isoform 2 [Pan troglod...	194.0	[0..2]	[163..18]
gi\|55726581 - gi\|55726581\|emb\|CAH90057.1\| hypothetical protein [Pongo abelii] PSF3_PONAB - DNA replication complex GINS protein PSF3 OS=Pongo abelii GN=GINS3 PE=2 SV=1	194.0	[0..2]	[163..18]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYYDIDSIL SENQKVPCTS TVSIPGLGHE GRMVPTGSKV ELPFWLAEVL AINSFVSIHM  60
   61 PAPFSSVVRN ALKANPNSVS IRDITTHYYH FAEKMLHLIS DDSLVQISLN TLRSRAMLIA 120
  121 DASLNPQGAL QQNSQFIEGL DDFEKHILRV SHNAHRSLIN WQNSTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.045757
Match:	2q9qD
Description:	No description for 2q9qD was found.

Predicted functions:

Term	Confidence	Notes
3'-5' DNA helicase activity	3.30007058745861	bayes_pls_golite062009
DNA helicase activity	2.7662250039458	bayes_pls_golite062009
binding	1.27082628880017	bayes_pls_golite062009
transcription regulator activity	1.2336233528067	bayes_pls_golite062009
helicase activity	1.2110072302388	bayes_pls_golite062009
transcription elongation regulator activity	0.37490315580617	bayes_pls_golite062009
catalytic activity	0.161911144249814	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: