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View Structure Prediction Details

Protein: gi|109082058
Organism: Macaca mulatta
Length: 137 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109082058.

Description E-value Query
Range		 Subject
Range
gi|114658435 - gi|114658435|ref|XP_001142851.1| PREDICTED: similar to cellular retinoic acid-binding protein; CRABP...
 4.0E-54 [1..137] [245..381]
ENSOCUP000000003... - pep:novel scaffold:oryCun2:GL018746:701847:707770:1 gene:ENSOCUG00000000431 transcript:ENSOCUT000000...
tr|G3H0C0|G3H0C0... - Cellular retinoic acid-binding protein 1 OS=Cricetulus griseus GN=I79_003575 PE=3 SV=1
gi|50545 - gi|50545|emb|CAA33509.1| unnamed protein product [Mus sp.]
RABP1_RAT - Cellular retinoic acid-binding protein 1 OS=Rattus norvegicus GN=Crabp1 PE=1 SV=3
RABP1_BOVIN - Cellular retinoic acid-binding protein 1 OS=Bos taurus GN=CRABP1 PE=1 SV=2
RABP1_MOUSE - Cellular retinoic acid-binding protein 1 OS=Mus musculus GN=Crabp1 PE=1 SV=2
gi|239916544 - gi|239916544|gb|ACS34761.1| cellular retinoic acid binding protein I [Mesocricetus auratus]
 9.0E-49 [1..137] [1..137]
gi|48146151 - gi|48146151|emb|CAG33298.1| CRABP1 [Homo sapiens]
 3.0E-48 [1..137] [1..137]
RABP1_CHICK - Cellular retinoic acid-binding protein 1 OS=Gallus gallus GN=CRABP1 PE=2 SV=4
 5.0E-48 [1..137] [1..137]
gi|162906, gi|30... - gi|30794346|ref|NP_851371.1| cellular retinoic acid binding protein 1 [Bos taurus], gi|162906|gb|AAA...
 7.0E-48 [1..137] [1..138]
gi|40217926 - gi|40217926|gb|AAR82892.1| cellular retinoic acid-binding protein; CRABP [Astatotilapia burtoni]
 7.0E-48 [1..137] [1..137]
RABP1_PELSI - Cellular retinoic acid-binding protein 1 OS=Pelodiscus sinensis GN=CRABP1 PE=2 SV=3
 3.0E-47 [1..137] [1..137]

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Predicted Domain #1
Region A:
Residues: [1-137] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNFAGTWKM RSSENFDELL KALGVNAMLR KVAVAAASKP HVEIRQDGDQ FYIKTSTTVR  60
   61 TTEINFKVGE GFEEETVDGR KCRSLATWEN ENKIHCTQTL LEGDGPKTYW TRELANDELI 120
  121 LTFGADDVVC TRIYVRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.30103
Match: 1cbiA
Description: Cellular retinoic-acid-binding protein (CRABP)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
long-chain fatty acid transporter activity 5.31242454679135 bayes_pls_golite062009
fatty acid transporter activity 5.05947161650978 bayes_pls_golite062009
lipid transporter activity 4.30505384117861 bayes_pls_golite062009
retinoid binding 3.86745158299736 bayes_pls_golite062009
isoprenoid binding 3.80802424204178 bayes_pls_golite062009
lysophospholipid transporter activity 3.53484598441971 bayes_pls_golite062009
retinol binding 3.41359399354212 bayes_pls_golite062009
binding 2.93830472620404 bayes_pls_golite062009
transcription regulator activity 2.27413749831465 bayes_pls_golite062009
transporter activity 2.15627660314839 bayes_pls_golite062009
transcription repressor activity 1.45696778890481 bayes_pls_golite062009
protein binding 1.23450129884619 bayes_pls_golite062009
prostaglandin-D synthase activity 1.18764036773412 bayes_pls_golite062009
lipid binding 1.0002255159651 bayes_pls_golite062009
retinol transporter activity 0.811095267558536 bayes_pls_golite062009
fatty acid binding 0.761923641769607 bayes_pls_golite062009
substrate-specific transporter activity 0.670647472301401 bayes_pls_golite062009
retinoic acid binding 0.539496110498594 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.50851501669551 bayes_pls_golite062009
bile acid binding 0.37501307074598 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle