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View Structure Prediction Details

Protein: gi|109083327, gi...
Organism: Macaca mulatta
Length: 246 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109083327, gi....

Description E-value Query
Range		 Subject
Range
gi|73962756, gi|... - gi|73962764|ref|XP_862262.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome iota ...
 4.0E-73 [1..246] [1..246]
gi|109084670, gi... - gi|109084670|ref|XP_001095483.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome i...
 7.0E-73 [1..246] [1..246]
PSA6_MOUSE - Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1
 1.0E-72 [1..246] [1..246]
gi|50540244, gi|... - gi|50540244|ref|NP_001002589.1| zgc:92716 [Danio rerio], gi|49902952|gb|AAH76196.1| Zgc:92716 [Danio...
 1.0E-72 [1..246] [1..246]
gi|47222687 - gi|47222687|emb|CAG00121.1| unnamed protein product [Tetraodon nigroviridis]
 7.0E-72 [1..246] [1..246]
PSA6A_ARATH - Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2
 8.0E-72 [1..246] [1..246]
PSA6_TOBAC - Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1
 1.0E-71 [1..246] [1..246]
PSA6_SOYBN - Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2
 1.0E-71 [1..246] [1..246]

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Predicted Domain #1
Region A:
Residues: [1-246] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRGSSAGFD RHITIFSPEG RLYQVEYAFK AINQGGLTSV AVRGKDCAVI VTQKKVPDKL  60
   61 LDSSTVTHLF KITENIGCVM TGMTADSRSQ VQRARYEAAN WKYKYGYEIP VDMLCKRIAD 120
  121 ISQVYTQNAE MRPLGCCMIL IGIDEEQGPQ VYKCDPAGYY CGFKATAAGV KQTESTSFLE 180
  181 KKVKKKFDWT FEQTVETAIT CLSTVLSIDF KPSEIEVGVV TVENPKFRIL TEAEIDAHLV 240
  241 ALAERD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.522879
Match: 1iruA
Description: Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
endopeptidase activity 6.91642761177919 bayes_pls_golite062009
peptidase activity 6.84511694091156 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 6.5973571808298 bayes_pls_golite062009
hydrolase activity 4.47652590304822 bayes_pls_golite062009
threonine-type endopeptidase activity 2.98214579292788 bayes_pls_golite062009
threonine-type peptidase activity 2.98214579292788 bayes_pls_golite062009
binding 1.75265921676176 bayes_pls_golite062009
nucleic acid binding 1.39216781236247 bayes_pls_golite062009
catalytic activity 1.19663085909195 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle