| Protein: | sns-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1542 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sns-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
778.0 | [0..36] | [1542..36] |
|
Region A: Residues: [1-203] |
1 11 21 31 41 51
| | | | | |
1 MALQQQHQRH QQHQQHQQQQ QQQQQQQHIK WQQHATKRRR CRQHWIKHLQ LLRLLAVIVL 60
61 ASAPVPSHAQ QQKFRTTPHD LQVLEGAEAM MRCEVANVAG AVQWTKDGFA LGFSAVIPGF 120
121 PRYSVLGDRK QGIYNLRISN ASINDDADYQ CQVGPARLNS AIRANAKLTV ISPPASIEIK 180
181 GYSHNSKVEV RENQDLQLKC IVA
|
| Detection Method: |  |
| Confidence: | 42.221849 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [204-850] |
1 11 21 31 41 51
| | | | | |
1 NAKPAAQIVW YRGNVEYKPE KREDTVEEST AKRFTTTSSL KLKPGPDDDY TEYTCQARHK 60
61 ALSPDMPMRA TVQLSVLYPP GPPYIEGYSA GETLRRGQTV ELMCRSRGGN PPAQLIWYKN 120
121 GSQIRMAYRT SGRLSENIYT FTAEAGDNKA RFRCEASNVM SQNPLKAEVE LSVLFAPTHV 180
181 TVMGPTEARV GDIVPLTCTT APSNPPAEIK WMVGGRQVRN ATSKTIVSPE GGWTTTSNIT 240
241 AVVEPNKRSL VVICHGLNMQ LTENVVSTHT INVLYPPAPP LISGYMEGQI IPAGSVQKLL 300
301 CVSSGGNPLA TLTWYKNDKR INSVIRAADK SVSAEITILA NVSDNQAQYR CEASNSATEI 360
361 PLFQSTTLSV HFAPETVKIR IEPEELRPGM EATIICDSSS SNPPAKLSWW KDGIPIEGIN 420
421 NTSKPGLWGG TVSTLEFRVN VTQEMNGQVY TCQSANEALQ RSAHEAVSLD VLYRPKFVPP 480
481 PSSTAVGVEG ESLQVSLQTR ANPTPVTYKW TKDGTTIPQD GDHRIFADGG SLNFTRLHRD 540
541 DAGIYSCSAS NSQGGATLNI TVVVEYGTTI KSVSENIVVN PGEDAMLSCT VEGKPLTEEH 600
601 VKWERVGYDM TVKTSTTFAN GTSYLHIKDA KREDVGNFRC VADNRVD
|
| Detection Method: | |
| Confidence: | 68.0 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [851-1061] |
1 11 21 31 41 51
| | | | | |
1 NPTNRDILLI VKFAPEIAKT PTLLRAASGT GERGRLPCRA QGSPKPQFIW RQDKKDLPIN 60
61 RTYKYEVEER KIDSLTYEST LIVDKVAPAD YGAYECVARN ELGEAVETVR LEITSQPDPP 120
121 LSLNILNVTH DTVTLAWTPG FDGGLKASYR VRYRMADREQ YKYIDGLPNS HKLTIGGLRM 180
181 NTLYLFSVMS WNELGQSSYL PDLARAETKE A
|
| Detection Method: | |
| Confidence: | 38.522879 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1062-1169] |
1 11 21 31 41 51
| | | | | |
1 PPPSHPASSL GGGPPTTSQT PLGGTSGMLL VGVGAGIVVV LLNVFVIGCC LHKRNEKRLK 60
61 RGLELMPAEL TEDSSNTPNL VIIGISLAAF GFLLVNASLV AWFFVHQR
|
| Detection Method: | |
| Confidence: | 7.69897 |
| Match: | 1uenA |
| Description: | Solution Structure of The Third Fibronectin III Domain of Human KIAA0343 Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor activity | 3.28625508322269 | bayes_pls_golite062009 |
| transmembrane receptor activity | 3.25570370343123 | bayes_pls_golite062009 |
| protein binding | 3.24522318184038 | bayes_pls_golite062009 |
| signal transducer activity | 2.84396290475308 | bayes_pls_golite062009 |
| molecular transducer activity | 2.84396290475308 | bayes_pls_golite062009 |
| binding | 2.69537882298808 | bayes_pls_golite062009 |
| receptor binding | 2.38673889309915 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 2.32179186005318 | bayes_pls_golite062009 |
| cytokine binding | 2.06262704705789 | bayes_pls_golite062009 |
| axon guidance receptor activity | 2.01367445237355 | bayes_pls_golite062009 |
| growth factor binding | 1.86030084022873 | bayes_pls_golite062009 |
| interleukin-6 receptor activity | 1.71333534442333 | bayes_pls_golite062009 |
| interleukin-6 binding | 1.71333534442333 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 1.67897732952716 | bayes_pls_golite062009 |
| cytokine receptor activity | 1.56546704499749 | bayes_pls_golite062009 |
| cytokine activity | 1.22704614254639 | bayes_pls_golite062009 |
| heparin binding | 1.15000556789505 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.1388293884749 | bayes_pls_golite062009 |
| protein dimerization activity | 0.86564366658585 | bayes_pls_golite062009 |
| ciliary neurotrophic factor receptor activity | 0.71036287694215 | bayes_pls_golite062009 |
| structural constituent of muscle | 0.68515307569834 | bayes_pls_golite062009 |
| sialic acid binding | 0.678724159869891 | bayes_pls_golite062009 |
| ankyrin binding | 0.56921114104552 | bayes_pls_golite062009 |
| identical protein binding | 0.564711394496051 | bayes_pls_golite062009 |
| oncostatin-M receptor activity | 0.549288554401419 | bayes_pls_golite062009 |
| leukemia inhibitory factor receptor activity | 0.549288554401419 | bayes_pls_golite062009 |
| polysaccharide binding | 0.54737137289904 | bayes_pls_golite062009 |
| interleukin-2 binding | 0.541128190292301 | bayes_pls_golite062009 |
| monosaccharide binding | 0.356315624949755 | bayes_pls_golite062009 |
| pattern binding | 0.31156427047296 | bayes_pls_golite062009 |
| protein homodimerization activity | 0.116391819218123 | bayes_pls_golite062009 |
| integrin binding | 0.0873424694168858 | bayes_pls_golite062009 |
| cytokine receptor binding | 0.0839350971743902 | bayes_pls_golite062009 |
| transcription activator activity | 0.0209293958870509 | bayes_pls_golite062009 |
|
Region A: Residues: [1170-1282] |
1 11 21 31 41 51
| | | | | |
1 RKKVAETTNQ PAKTATIEMY APSSYNDTVT GETLSSVSEK SESYSNEGSS QPEYIDEVRK 60
61 KAASTYLVEG SDMPPPRYQK DGTLPVIYPN NVVNACTLPH PRHNNGSAAI HMT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1283-1542] |
1 11 21 31 41 51
| | | | | |
1 RDDQMLISKG VYIPSPSPAP PPDGSYYNMN SDRYLSYPPM EYPAALDFTA QPMPMAHLQP 60
61 MTVTSLATNG GPTLIGNGSV AAVAGGSGTL RRGILRGVVG VPQPDVTHHT STVGGSPMQM 120
121 LHDLHPVNLS ASTLTTSTTL NGSLPTATAT LPRQPHGILK DPNRNKQQQQ QQQQQQQQQQ 180
181 LQHQQQLLNA SLVGVGVPVS APLGSLQILN LPPASGGLGN NLLMTTNAFD PTTVGLSSFG 240
241 AVSQAGGIPV AYTDADGHLV
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1koaA |
| Description: | TWITCHIN KINASE FRAGMENT (C.ELEGANS), AUTOREGULATED PROTEIN KINASE AND IMMUNOGLOBULIN DOMAINS |
Matching Structure (courtesy of the PDB): |
|
