| Protein: | Nipped-B-PE, Nip... |
| Organism: | Drosophila melanogaster |
| Length: | 2077 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nipped-B-PE, Nip....
| Description | E-value | Query Range |
Subject Range |
|
|
2089.0 | [0..1] | [2077..1] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MGERDNPTVP VTTLAGLTST SDLLSELPVA DSLQSAASLN KSLLFHALVA NESSNLLSMR 60
61 NENLVRQLVT AIERTNSDNI ELIHCPVQDT ATNCSTYPEL LQGIYHFRPA VFNTSIKIHS 120
121 PDQHTANARL EAKKMQIDSY SIPECYASPT NLSISNEHQL QDAQACFNQL TSMT
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [175-362] |
1 11 21 31 41 51
| | | | | |
1 SKEILEEFSQ INFKENATEK DKIDVIENSD LNVTKILSQN TLKKKSNTPE RSTVQSIQEQ 60
61 FFIQQQEANY NLKHDLNQVS TNVGQIQNIS DTFPQEPSNF NLNSVNIPNM LYVQSPPFTE 120
121 SEPTQAHHSS IEYLKKKKSQ ILDVSILNRQ QVLENTSLHI INKSSTYQTN QNVSTTTSTS 180
181 TSSSGKSQ
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [363-471] |
1 11 21 31 41 51
| | | | | |
1 VRVCINRLSI EDSRLMQQSI KKFVQKSPEL ARSMGLLQET CQQQHENLNI IPTSAEECVL 60
61 ESRASSTNNT VKIPIDTFST IKADEKRSAK RKLAISIGDI PPEQIFSKP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [472-532] |
1 11 21 31 41 51
| | | | | |
1 KMRRVERITP LSNTKCVKEE VTRSQTYQQF IRNMDHIIEI LDDSESPNFD SEDVDETIEC 60
61 I
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [533-767] |
1 11 21 31 41 51
| | | | | |
1 SSKLLNSMST DVAKLKAKQA LDSIPKNKLT LLINYAMRNV YLARNYFAGT EDEDEFVDDE 60
61 VIEKLLNAMD ACLLICNIYS TVSDLQFLQE DNVSHIIKFT QFQLRETIFP LHDPVYTAKS 120
121 IKRTTHRKKI KSHQAQNRSM QLFYLKTVEL LKVFVTLFDK CVFVDTIVLP LSTLAIEPFF 180
181 VDNIETLQFV CLELVTTIFR KERYDKIRNS ILGDILTSID RLPSSKKNLR PYKLT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [768-959] |
1 11 21 31 41 51
| | | | | |
1 NNGGNIQMVT ALVLQLIQCA TILPDSLCDN GKFSNKPQEG NTFDEEGKKL LQPSQDLLVL 60
61 QKYDVAVSIG GNFLTTFLNK CKSRSNETDF RPLFENFIHD LLATVNKPEW PASELLLSLL 120
121 GTMLVRYVSD KGIEQSIRLV SLDYLGIVAA RLRKDTVESR CRVNIIDSMI QSIKLEQEKE 180
181 GDVTSNNDQF DL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [960-1045] |
1 11 21 31 41 51
| | | | | |
1 EPEEQRTDFL QKILLDFLAV NAQEENLIWD YARHFYLAQW YRDVIYQRRR INDGKKGLAF 60
61 RKSKIRNNRR TNGDYLDTSD SGSCDE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1046-1866] |
1 11 21 31 41 51
| | | | | |
1 SDTDTNKKRI HCVDSNDFEL NINIYKALEA RKQYFINKIK PFSVFGEQNH SSNQHIKTYI 60
61 DYNNAQLIAQ YLATKRPFSQ SFDGCLKKII LVVNEPSIAV RTRAMKCLAN IVEVDPLVLK 120
121 RKDMQMGVNQ KFLDTAISVR EAAVDLVGKF VLSNQDLIDQ YYDMLSTRIL DTGVSVRKRV 180
181 IKILRDICLE YPDFSKIPEI CVKMIRRVHD EEGIQKLVTE VFMKMWFTPC TKNDKIGIQR 240
241 KINHIIDVVN TAHDTGTTWL EGLLMSIFKP RDNMLRSEGC VQEFIKKNSE PPMDIVIACQ 300
301 QLADGLVDRL IELEDTDNSR MLGCITTLHL LAKVRPQLLV KHAITIEPYL NIKCHSATAA 360
361 KFICAVADIL EKVVPLVNNA SESFLASLEE HLMLLVVSRN QAEVTSCVSC LGALVNKITH 420
421 NFKLIRDCFQ KFYRVLDVSR SQVIQGNNSV DNIYTPSFRR SLFTIGILMR YFDFKSPIAL 480
481 GETNDGLPVS ICEDVFHCLM FFCRCTNQEI RKQALISLGS FCVLNDGYLT RSELKNLYCE 540
541 ILSSIANDAG FKIICMRNIW IYLTESEMFM HNKEKEWEKQ SKHEDLKEMN DVSSGMASRI 600
601 IQLYLEEILE CFLNRDDTVR LWAVKVIQIV LRQGLVHPVR MVPYLICLST DHRIESAHRA 660
661 DALLKDIDKT YSGFVNMKVQ FGLQLCFKLQ KILQINNRGK LEIIRGYASR GPDNTTTALN 720
721 DFLYTLLRTT KPQRRALVQT VTKQFDDQKT SLQQMLYIAD NLAYFPYVVQ DEPLYLIHQI 780
781 DLLISMAGTH LLATFKEHIK PSDKEGDVLE DDDDVEDPEV L
|
| Detection Method: | |
| Confidence: | 2.23 |
| Match: | 1gw5B |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.96084803796407 | bayes_pls_golite062009 |
| nucleic acid binding | 2.69616509670156 | bayes_pls_golite062009 |
| transcription regulator activity | 2.19067997822967 | bayes_pls_golite062009 |
| DNA binding | 1.96172460362671 | bayes_pls_golite062009 |
| protein binding | 1.61131270705552 | bayes_pls_golite062009 |
| transcription factor activity | 1.21493607378314 | bayes_pls_golite062009 |
| RNA binding | 0.243875756041061 | bayes_pls_golite062009 |
| transcription activator activity | 0.142253868848261 | bayes_pls_golite062009 |
| transcription factor binding | 8.79739237675814E-4 | bayes_pls_golite062009 |
|
Region A: Residues: [1867-2077] |
1 11 21 31 41 51
| | | | | |
1 FNRLPEDLTE IIKCITSAQA CMLLLILKDH LKEMYAITDS KISRYSPSEQ KLYEKAVTRK 60
61 SVNDFNPKTT IDVIKKQMSQ EKLSTDINFT LTKEEKLDLV VKYLDFKQLM LKLDPDDGDS 120
121 DADESRDKTM LNISASSDGV AFSSSAKNSH SACDGYSLTV TDVVDVPMSH IAKASMLTSK 180
181 PSGRKTNPVR TKKKRRKIDS TDDETSDAEY A
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
