| Protein: | gi|215704203, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 421 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215704203, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
373.0 | [0..1] | [421..1] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MACCCLRAST APRFLLFRAA ARRAPLPVAV SRKGFSEQSV LPITDMIENF QGPSMENIPR 60
61 IPLYDD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [67-421] |
1 11 21 31 41 51
| | | | | |
1 SLPSSLLTTS PNPSDSVAHA DPSKSRIMLV DGTSVMYRSY YKILAQLQHG QLEHADGNGD 60
61 WVLTIFKALS LVLDMLEFIP SHAAVVFDHD GVPYGHYTAM PSKECHMAKG MTFRHMLYPS 120
121 YKSNRIPTPD TIVQGMQYLK ASIKAMSIKV IEVPGVEADD VIGTLAVSSV SAGYKVRIVS 180
181 PDKDFFQILS PSLRLLRIAP RGSGMVSFGV EDFVKRYGAL KPSQFVDVVA LSGDKADNIP 240
241 GVEGIGDINA VKLITKFGSL ENLLKSVDEV EEERIKQALI SQSEQAMLCK SLATLRSDLP 300
301 SYMVPFKTSD LVFQKPKDDG AKFIKLLRAL EAYAEGSSAD LIIRRAAYLW NKLNS
|
| Detection Method: | |
| Confidence: | 70.30103 |
| Match: | 1taqA |
| Description: | STRUCTURE OF TAQ DNA POLYMERASE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| deoxyribonuclease activity | 2.76214864778674 | bayes_pls_golite062009 |
| endonuclease activity | 2.56010795198277 | bayes_pls_golite062009 |
| flap endonuclease activity | 2.53758571886688 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 2.52591027275626 | bayes_pls_golite062009 |
| exonuclease activity | 2.5100646091515 | bayes_pls_golite062009 |
| hydrolase activity | 2.33175366185717 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 2.29772244408635 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.13887861178898 | bayes_pls_golite062009 |
| catalytic activity | 1.74578892363435 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 1.70427268530827 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 1.70203514795969 | bayes_pls_golite062009 |
| nuclease activity | 1.66579180796794 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.34815460610781 | bayes_pls_golite062009 |
| 5'-3' exodeoxyribonuclease activity | 0.99824405209499 | bayes_pls_golite062009 |
| single-stranded DNA specific exodeoxyribonuclease activity | 0.93326471256937 | bayes_pls_golite062009 |
| double-stranded DNA specific exodeoxyribonuclease activity | 0.75324098318674 | bayes_pls_golite062009 |
| 5'-flap endonuclease activity | 0.59155477779901 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.44366322002827 | bayes_pls_golite062009 |
| binding | 0.135870115528543 | bayes_pls_golite062009 |
| single-stranded DNA specific 5'-3' exodeoxyribonuclease activity | 0.0390389256036001 | bayes_pls_golite062009 |
| DNA binding | 0.0110216579283602 | bayes_pls_golite062009 |
