| Protein: | gi|870745, gi|18... |
| Organism: | Homo sapiens |
| Length: | 306 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|870745, gi|18....
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-49 | [10..304] | [138..444] |
|
|
2.0E-48 | [9..304] | [133..440] |
|
|
3.0E-48 | [11..304] | [133..438] |
|
|
4.0E-48 | [11..304] | [126..431] |
|
|
1.0E-47 | [10..305] | [109..424] |
|
|
3.0E-47 | [10..305] | [109..427] |
|
|
3.0E-47 | [10..305] | [109..425] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MSEEQFGGDG AAAAATAAVG GSAGEQEGAM VAATQGAAAA AGSGAGTGGG TASGGTEGGS 60
61 AESEGAKIDA SKNEEDEGHS NSSPRHSE
|
| Detection Method: |  |
| Confidence: | 25.0 |
| Match: | 2dhsA |
| Description: | No description for 2dhsA was found. |
|
Region A: Residues: [89-306] |
1 11 21 31 41 51
| | | | | |
1 AATAQREEWK MFIGGLSWDT TKKDLKDYFS KFGEVVDCTL KLDPITGRSR GFGFVLFKES 60
61 ESVDKVMDQK EHKLNGKVID PKRAKAMKTK EPVKKIFVGG LSPDTPEEKI REYFGGFGEV 120
121 ESIELPMDNK TNKRRGFCFI TFKEEEPVKK IMEKKYHNVG LSKCEIKVAM SKEQYQQQQQ 180
181 WGSRGGFAGR ARGRGGDQQS GYGKVSRRGG HQNSYKPY
|
| Detection Method: | |
| Confidence: | 36.39794 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.48484912902372 | bayes_pls_golite062009 |
| structural molecule activity | 1.40416767516887 | bayes_pls_golite062009 |
| transcription activator activity | 1.2789602751031 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
