| Protein: | SF3A1 |
| Organism: | Homo sapiens |
| Length: | 793 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SF3A1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-74 | [1..793] | [1..793] |
|
|
3.0E-74 | [1..793] | [1..793] |
|
|
4.0E-74 | [20..793] | [20..791] |
|
|
5.0E-74 | [1..793] | [1..793] |
|
|
1.0E-73 | [1..793] | [1..793] |
|
|
6.0E-73 | [1..793] | [1..791] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MPAGPVQAVP PPPPVPTEPK QPTEEEASSK EDSAPSKPVV GIIYPPPEVR NIVDKTASFV 60
61 ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE FKEGKAQEPS AA
|
| Detection Method: |  |
| Confidence: | 13.221849 |
| Match: | 2dt6A |
| Description: | No description for 2dt6A was found. |
|
Region A: Residues: [113-276] |
1 11 21 31 41 51
| | | | | |
1 IPKVMQQQQQ TTQQQLPQKV QAQVIQETIV PKEPPPEFEF IADPPSISAF DLDVVKLTAQ 60
61 FVARNGRQFL TQLMQKEQRN YQFDFLRPQH SLFNYFTKLV EQYTKILIPP KGLFSKLKKE 120
121 AENPREVLDQ VCYRVEWAKF QERERKKEEE EKEKERVAYA QIDW
|
| Detection Method: | |
| Confidence: | 15.09691 |
| Match: | 2dt7B |
| Description: | No description for 2dt7B was found. |
|
Region A: Residues: [277-512] |
1 11 21 31 41 51
| | | | | |
1 HDFVVVETVD FQPNEQGNFP PPTTPEELGA RILIQERYEK FGESEEVEME VESDEEDDKQ 60
61 EKAEEPPSQL DQDTQVQDMD EGSDDEEEGQ KVPPPPETPM PPPLPPTPDQ VIVRKDYDPK 120
121 ASKPLPPAPA PDEYLVSPIT GEKIPASKMQ EHMRIGLLDP RWLEQRDRSI REKQSDDEVY 180
181 APGLDIESSL KQLAERRTDI FGVEETAIGK KIGEEEIQKP EEKVTWDGHS GSMART
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [513-674] |
1 11 21 31 41 51
| | | | | |
1 QQAAQANITL QEQIEAIHKA KGLVPEDDTK EKIGPSKPNE IPQQPPPPSS ATNIPSSAPP 60
61 ITSVPRPPTM PPPVRTTVVS AVPVMPRPPM ASVVRLPPGS VIAPMPPIIH APRINVVPMP 120
121 PSAPPIMAPR PPPMIVPTAF VPAPPVAPVP APAPMPPVHP PP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [675-793] |
1 11 21 31 41 51
| | | | | |
1 PMEDEPTSKK LKTEDSLMPE EEFLRRNKGP VSIKVQVPNM QDKTEWKLNG QVLVFTLPLT 60
61 DQVSVIKVKI HEATGMPAGK QKLQYEGIFI KDSNSLAYYN MANGAVIHLA LKERGGRKK
|
| Detection Method: | |
| Confidence: | 11.522879 |
| Match: | 1we7A |
| Description: | Solution structure of Ubiquitin-like domain in SF3a120 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.63877637096497 | bayes_pls_golite062009 |
| RNA binding | 2.5865157751042 | bayes_pls_golite062009 |
| protein binding | 2.0758030814092 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.967509006593 | bayes_pls_golite062009 |
| structural molecule activity | 1.52853261170163 | bayes_pls_golite062009 |
| transcription regulator activity | 1.11533445164506 | bayes_pls_golite062009 |
| nucleic acid binding | 0.896431097217265 | bayes_pls_golite062009 |
| DNA binding | 0.859811565165317 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.580815305662395 | bayes_pls_golite062009 |
