| Protein: | PSMD12 |
| Organism: | Homo sapiens |
| Length: | 456 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSMD12.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..456] | [1..456] |
|
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0.0 | [1..456] | [1..456] |
|
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0.0 | [1..456] | [1..456] |
|
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0.0 | [1..456] | [1..456] |
|
|
0.0 | [1..456] | [1..456] |
|
|
0.0 | [1..456] | [1..456] |
|
|
0.0 | [1..456] | [1..456] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MADGGSERAD GRIVKMEVDY SATVDQRLPE CAKLAKEGRL QEVIETLLSL EKQTRTASDM 60
61 VSTSRILVAV VKMCYEAKEW DLLNENIMLL SKRRSQLKQA VAKMVQQCCT YVEEITDLPI 120
121 KLRLIDTLRM VTEGKIYVEI ERARLTKTLA TIKEQNGDVK EAASILQELQ VETYGS
|
| Detection Method: |  |
| Confidence: | 5.69897 |
| Match: | 2fo7A |
| Description: | Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [177-336] |
1 11 21 31 41 51
| | | | | |
1 MEKKERVEFI LEQMRLCLAV KDYIRTQIIS KKINTKFFQE ENTEKLKLKY YNLMIQLDQH 60
61 EGSYLSICKH YRAIYDTPCI QAESEKWQQA LKSVVLYVIL APFDNEQSDL VHRISGDKKL 120
121 EEIPKYKDLL KLFTTMELMR WSTLVEDYGM ELRKGSLESP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.699 | 0.971 | cytosol | a.1.1 | Globin-like |
|
Region A: Residues: [337-456] |
1 11 21 31 41 51
| | | | | |
1 ATDVFGSTEE GEKRWKDLKN RVVEHNIRIM AKYYTRITMK RMAQLLDLSV DESEAFLSNL 60
61 VVNKTIFAKV DRLAGIINFQ RPKDPNNLLN DWSQKLNSLM SLVNKTTHLI AKEEMIHNLQ 120
121
|
| Detection Method: | |
| Confidence: | 11.39794 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.50995556050336 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| DNA binding | 3.30822066787723 | bayes_pls_golite062009 |
| transcription factor activity | 2.60537570879007 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.46680509390433 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.32971938164691 | bayes_pls_golite062009 |
| transcription activator activity | 1.08566311616647 | bayes_pls_golite062009 |
| transcription repressor activity | 0.95491822926452 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.845023110629115 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
