YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE40394
Organism: Caenorhabditis elegans
Length: 709 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40394.

Description E-value Query
Range
Subject
Range
CE35897 - status:Partially_confirmed UniProt:Q7JMN1 protein_id:CAE48508.1
622.0 [0..1] [709..86]

Back

Predicted Domain #1
Region A:
Residues: [1-579]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASGSHVTL VENLPVEKVS SGERIAILDF GAQYGKVIDR RVRELLVQSE MFPLNTTART  60
   61 LIELGGFKGI IISGGPNSVF EPEAPSIDPE IFTCGLPVLG ICYGFQLMNK LNGGTVTREH 120
  121 IREDGACEIQ VDTSVHLFNG LHKTETVLLT HGDSVSEATV APDFKVMAKS GHHVAGICNE 180
  181 NRKLYGVQFH PEVDLTTNGT KMFENFLFKV VGCCGNFTIQ NREQSCISEI NSIVGDKKVL 240
  241 VMVSGGVDSA VCAALLRRAL GPNRVTAIHI DNGFMRHEES DAVEKSLAAL DLPIHRYNFG 300
  301 TTFRSSTEHC KDGEVALDEC DDPEMKRKII GNTFIRVKDV IMKDLNINHD EYFLAQGTLR 360
  361 PDLIESASAL ASGHADTIKT HHNDTFLVRE LRKLGKVVEP LKDFHKDEVR ELGKDLGLPE 420
  421 SIVQRHPFPG PGLAIRILCA SDKRPELMFN GPMYNGDVQG RIIDVTEQFL NSAINPSQGI 480
  481 YEHLQFEQAR NNVLLSLSER DRQLAEQQTF QISAHILPIK TVGVQGDARS YSYAVALSTE 540
  541 QRPIPWKLLF AYASVIPKLF HGVNRVVYAF GSKIEFSIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 136.0
Match: 1gpmA
Description: GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming carbon-nitrogen bonds 3.21758353153797 bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor 2.70451256281397 bayes_pls_golite062009
anthranilate synthase activity 2.51214170411838 bayes_pls_golite062009
phosphoribosylformylglycinamidine synthase activity 1.83575136996743 bayes_pls_golite062009
carbamoyl-phosphate synthase activity 1.74828881793189 bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 1.74029540439985 bayes_pls_golite062009
ligase activity 1.70348758031146 bayes_pls_golite062009
cysteine-type peptidase activity 1.63674478001979 bayes_pls_golite062009
oxo-acid-lyase activity 1.35896725827905 bayes_pls_golite062009
catalytic activity 1.30391542469987 bayes_pls_golite062009
binding 0.651391283589745 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.58055486321736 bayes_pls_golite062009
kinase activity 0.557302038379807 bayes_pls_golite062009
transferase activity 0.540671801549001 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.471850306495912 bayes_pls_golite062009
GMP synthase activity 0.413068109408727 bayes_pls_golite062009
asparagine synthase (glutamine-hydrolyzing) activity 0.3673193848392 bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity 0.270391651600004 bayes_pls_golite062009
nucleic acid binding 0.12569720972861 bayes_pls_golite062009
carbon-carbon lyase activity 0.0769356405014503 bayes_pls_golite062009
protein binding 0.0381338084094011 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [580-709]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLTRTYLVPH IVTKLQMADH IANNILFGRV AASDGTQLPN VGHKIQQMPV VLLPVDFDRD  60
   61 RDMIGSYRHS IVLRPFVTSD FMTGQAAIPG VHLPEETLIE MDKAIRTNVL GISRVLLDMT 120
  121 CKPPGTTEWE 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.12
Match: 1gpmA
Description: GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle