| Protein: | NCBP1 |
| Organism: | Homo sapiens |
| Length: | 790 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCBP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..790] | [122..911] |
|
|
0.0 | [1..790] | [14..803] |
|
|
0.0 | [1..790] | [1..790] |
|
|
0.0 | [1..790] | [1..790] |
|
|
0.0 | [1..790] | [1..783] |
|
|
0.0 | [1..790] | [1..790] |
|
Region A: Residues: [1-790] |
1 11 21 31 41 51
| | | | | |
1 MSRRRHSDEN DGGQPHKRRK TSDANETEDH LESLICKVGE KSACSLESNL EGLAGVLEAD 60
61 LPNYKSKILR LLCTVARLLP EKLTIYTTLV GLLNARNYNF GGEFVEAMIR QLKESLKANN 120
121 YNEAVYLVRF LSDLVNCHVI AAPSMVAMFE NFVSVTQEED VPQVRRDWYV YAFLSSLPWV 180
181 GKELYEKKDA EMDRIFANTE SYLKRRQKTH VPMLQVWTAD KPHPQEEYLD CLWAQIQKLK 240
241 KDRWQERHIL RPYLAFDSIL CEALQHNLPP FTPPPHTEDS VYPMPRVIFR MFDYTDDPEG 300
301 PVMPGSHSVE RFVIEENLHC IIKSHWKERK TCAAQLVSYP GKNKIPLNYH IVEVIFAELF 360
361 QLPAPPHIDV MYTTLLIELC KLQPGSLPQV LAQATEMLYM RLDTMNTTCV DRFINWFSHH 420
421 LSNFQFRWSW EDWSDCLSQD PESPKPKFVR EVLEKCMRLS YHQRILDIVP PTFSALCPAN 480
481 PTCIYKYGDE SSNSLPGHSV ALCLAVAFKS KATNDEIFSI LKDVPNPNQD DDDDEGFSFN 540
541 PLKIEVFVQT LLHLAAKSFS HSFSALAKFH EVFKTLAESD EGKLHVLRVM FEVWRNHPQM 600
601 IAVLVDKMIR TQIVDCAAVA NWIFSSELSR DFTRLFVWEI LHSTIRKMNK HVLKIQKELE 660
661 EAKEKLARQH KRRSDDDDRS SDRKDGVLEE QIERLQEKVE SAQSEQKNLF LVIFQRFIMI 720
721 LTEHLVRCET DGTSVLTPWY KNCIERLQQI FLQHHQIIQQ YMVTLENLLF TAELDPHILA 780
781 VFQQFCALQA
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1n52A |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA cap binding | 6.31996430626206 | bayes_pls_golite062009 |
| RNA binding | 4.20683443264388 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| protein binding | 2.78733902345842 | bayes_pls_golite062009 |
| nucleic acid binding | 2.74745843355294 | bayes_pls_golite062009 |
| mRNA binding | 2.49094746544717 | bayes_pls_golite062009 |
| transcription regulator activity | 2.16673352512615 | bayes_pls_golite062009 |
| DNA binding | 1.95242774903625 | bayes_pls_golite062009 |
| structural molecule activity | 1.49689395735141 | bayes_pls_golite062009 |
| transcription activator activity | 1.33885628961586 | bayes_pls_golite062009 |
| transcription factor activity | 1.20660383756339 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.03835316513447 | bayes_pls_golite062009 |
| RNA 7-methylguanosine cap binding | 0.841392474686331 | bayes_pls_golite062009 |
| hydrolase activity | 0.42501390959416 | bayes_pls_golite062009 |
| actin binding | 0.278432079866074 | bayes_pls_golite062009 |
| transcription factor binding | 0.0221966060394205 | bayes_pls_golite062009 |
