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View Structure Prediction Details

Protein: TRAPPC2, TRAPPC2P1
Organism: Homo sapiens
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRAPPC2, TRAPPC2P1.

Description E-value Query
Range		 Subject
Range
TPPC2_MOUSE - Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1
gi|68163405, gi|... - gi|68163405|ref|NP_001020136.1| trafficking protein particle complex 2 [Rattus norvegicus], gi|62666...
 8.0E-45 [1..140] [1..140]
gi|13384832, gi|... - gi|13384832|ref|NP_079708.1| trafficking protein particle complex 2 [Mus musculus], gi|12835553|dbj|...
 1.0E-44 [1..140] [1..140]
TPPC2_PIG - Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2
TPPC2_BOVIN - Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1
 1.0E-44 [1..140] [1..140]
TPPC2_PONPY - Trafficking protein particle complex subunit 2 - Pongo pygmaeus (Orangutan)
TPPC2_PONAB - Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1
 2.0E-44 [1..140] [1..140]
tr|M3X8U7|M3X8U7... - Uncharacterized protein OS=Felis catus GN=TRAPPC2 PE=4 SV=1
TPPC2_CANLF - Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAPPC2 PE=3 SV=1
gi|149744249 - gi|149744249|ref|XP_001489143.1| PREDICTED: similar to Trafficking protein particle complex subunit ...
 4.0E-44 [1..140] [1..140]
gi|50730259, gi|... - gi|57525493|ref|NP_001006263.1| trafficking protein particle complex 2 [Gallus gallus], gi|53130740|...
 1.0E-43 [1..140] [1..140]
gi|9937493 - gi|9937493|gb|AAG02469.1| MBP-1 interacting protein-2A; MIP-2A [Homo sapiens]
 7.0E-43 [1..140] [1..140]

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Predicted Domain #1
Region A:
Residues: [1-140] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSFYFVIV GHHDNPVFEM EFLPAGKAES KDDHRHLNQF IAHAALDLVD ENMWLSNNMY  60
   61 LKTVDKFNEW FVSAFVTAGH MRFIMLHDIR QEDGIKNFFT DVYDLYIKFS MNPFYEPNSP 120
  121 IRSSAFDRKV QFLGKKHLLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.221849
Match: 2j3wA
Description: No description for 2j3wA was found.

Predicted functions:

Term Confidence Notes
clathrin binding 2.46091145052374 bayes_pls_golite062009
protein-cysteine S-palmitoleyltransferase activity 2.09062141077479 bayes_pls_golite062009
protein-cysteine S-acyltransferase activity 2.09062141077479 bayes_pls_golite062009
binding 1.96298363185486 bayes_pls_golite062009
SNAP receptor activity 1.56904739000414 bayes_pls_golite062009
transporter activity 1.19620787652793 bayes_pls_golite062009
protein transporter activity 0.83435143456632 bayes_pls_golite062009
palmitoyltransferase activity 0.76687594030379 bayes_pls_golite062009
protein binding 0.690762864611134 bayes_pls_golite062009
substrate-specific transporter activity 0.326071696170609 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.131410992694836 bayes_pls_golite062009
pyrophosphatase activity 0.0936690070284361 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0846345824909659 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0820309452260982 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle