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View Structure Prediction Details

Protein: DLX2
Organism: Homo sapiens
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DLX2.

Description E-value Query
Range
Subject
Range
gi|47228654 - gi|47228654|emb|CAG07386.1| unnamed protein product [Tetraodon nigroviridis]
8.0E-27 [1..217] [218..437]
gi|109100071 - gi|109100071|ref|XP_001086012.1| PREDICTED: distal-less homeobox 2 [Macaca mulatta]
9.0E-27 [1..328] [1..328]
gi|4322076 - gi|4322076|gb|AAD15947.1| homeobox protein [Danio rerio]
1.0E-25 [12..221] [1..216]
gi|745776, gi|10... - gi|745776|prf||2016458C Hox-4 gene, gi|520612|emb|CAA84516.1| Hox-4 homeodomain protein [Branchiosto...
5.0E-25 [144..240] [1..97]
gi|4388694 - gi|4388694|emb|CAA30123.1| unnamed protein product [Xenopus laevis]
5.0E-25 [143..224] [11..92]
gi|14010303 - gi|14010303|gb|AAK51942.1|AF362087_1 deformed [Lithobius forficatus]
6.0E-25 [149..236] [7..94]
gi|74004890 - gi|74004890|ref|XP_852451.1| PREDICTED: similar to Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1) [Cani...
7.0E-25 [88..243] [76..231]
gi|15823132 - gi|15823132|dbj|BAB68717.1| homeobox protein [Mus spicilegus]
gi|15823120, gi|... - gi|15823128|dbj|BAB68715.1| homeobox protein [Mus musculus], gi|15823126|dbj|BAB68714.1| homeobox pr...
gi|15823118 - gi|15823118|dbj|BAB68710.1| homeobox protein [Mus musculus musculus]
7.0E-25 [146..310] [7..174]
gi|87295479 - gi|87295479|gb|ABD37036.1| deformed [Artemia sp. Kazakhstan HL-2005]
7.0E-25 [147..239] [3..95]
gi|5669121|gb|AA... - sex combs reduced homeobox protein [Nereis virens]
gi|5669121 - gi|5669121|gb|AAD46170.1|AF151667_1 sex combs reduced homeobox protein [Nereis virens]
8.0E-25 [148..221] [7..80]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGVFDSLVA DMHSTQIAAS STYHQHQQPP SGGGAGPGGN SSSSSSLHKP QESPTLPVST  60
   61 ATDSSYYTNQ QHPAGGGGGG GSPYAHMGSY QYQASGLNNV PYSAKSSYDL GY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAAYTSYAPY GTSSSPANNE PEKEDLEPEI RIVNGKPKKV RKPRTIYSSF QLAALQRRFQ  60
   61 KTQYLALPER AELAASLGLT QTQVKIWFQN RRSKFKKMWK SGEIPSEQHP GASA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.154902
Match: 1b72A
Description: Homeobox protein hox-b1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 5.13863038737912 bayes_pls_golite062009
DNA binding 4.66369707598026 bayes_pls_golite062009
nucleic acid binding 4.51452285155271 bayes_pls_golite062009
transcription factor activity 4.06706589695599 bayes_pls_golite062009
transcription repressor activity 3.55154985983449 bayes_pls_golite062009
sequence-specific DNA binding 3.5139760613123 bayes_pls_golite062009
RNA polymerase II transcription factor activity 3.16896789933192 bayes_pls_golite062009
transcription activator activity 3.10621734076555 bayes_pls_golite062009
binding 3.02779747447702 bayes_pls_golite062009
protein binding 1.88087411289001 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 1.73068440195944 bayes_pls_golite062009
chromatin binding 1.68956710349366 bayes_pls_golite062009
transcription corepressor activity 1.49423102874486 bayes_pls_golite062009
transcription factor binding 1.40653841901929 bayes_pls_golite062009
transcription cofactor activity 0.84983974758882 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [227-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPPCASPPVS APASWDFGVP QRMAGGGGPG SGGSGAGSSG SSPSSAASAF LGNYPWYHQT  60
   61 SGSASHLQAT APLLHPTQTP QPHHHHHHHG GGGAPVSAGT IF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.0
Match: 2awzA
Description: Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5h)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle