| Protein: | gi|170650730, gi... |
| Organism: | Homo sapiens |
| Length: | 317 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170650730, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-53 | [1..317] | [20..336] |
|
|
1.0E-52 | [1..317] | [1..317] |
|
|
5.0E-52 | [1..317] | [1..317] |
|
|
7.0E-46 | [1..317] | [1..291] |
|
|
2.0E-45 | [1..317] | [1..291] |
|
|
3.0E-45 | [1..317] | [1..291] |
|
|
1.0E-44 | [1..317] | [1..291] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MSCQAFTSAD TFIPLNSDAS ATLPLIMHHS AAECLPVSNH ATNVMSTVPS ILSLIQTPKC 60
61 LCTHFSVTTL GNTATGLHYS VPSCHYGNQP STYGVMAGSL TPCLYKFPDH TLSHGFPP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.412 | a.118.1 | ARM repeat |
| View | Download | 0.241 | b.6.1 | Cupredoxins |
| View | Download | 0.217 | a.39.1 | EF-hand |
|
Region A: Residues: [119-317] |
1 11 21 31 41 51
| | | | | |
1 IHQPLLAEDP TAADFKQELR RKSKLVEEPI DMDSPEIREL EKFANEFKVR RIKLGYTQTN 60
61 VGEALAAVHG SEFSQTTICR FENLQLSFKN ACKLKAILSK WLEEAEQVGA LYNEKVGANE 120
121 RKRKRRTTIS IAAKDALERH FGEQNKPSSQ EIMRMAEELN LEKEVVRVWF CNRRQREKRV 180
181 KTSLNQSLFS ISKEHLECR
|
| Detection Method: | |
| Confidence: | 24.154902 |
| Match: | 1au7A |
| Description: | Pit-1 POU homeodomain; Pit-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.51228466689923 | bayes_pls_golite062009 |
| nucleic acid binding | 5.37468811865033 | bayes_pls_golite062009 |
| transcription regulator activity | 5.05236457497789 | bayes_pls_golite062009 |
| transcription factor activity | 3.89464979825638 | bayes_pls_golite062009 |
| binding | 3.66501723413351 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25218945600666 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22754992035091 | bayes_pls_golite062009 |
| transcription activator activity | 3.15886611325686 | bayes_pls_golite062009 |
| transcription repressor activity | 1.75958281319075 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
| protein binding | 1.55649304400241 | bayes_pls_golite062009 |
| chromatin binding | 1.2739759748489 | bayes_pls_golite062009 |
| transcription factor binding | 1.02788976342343 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.92393807212912 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.8718993114781 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.81316180547536 | bayes_pls_golite062009 |
| promoter binding | 0.22765608166458 | bayes_pls_golite062009 |
| catalytic activity | 0.00446472034106909 | bayes_pls_golite062009 |
