| Protein: | NFYC |
| Organism: | Homo sapiens |
| Length: | 458 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFYC.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..458] | [105..562] |
|
|
0.0 | [1..437] | [1..418] |
|
|
0.0 | [1..458] | [1..439] |
|
|
2.0E-84 | [1..351] | [543..868] |
|
|
2.0E-77 | [1..351] | [1..332] |
|
|
5.0E-77 | [1..351] | [1..333] |
|
|
8.0E-77 | [1..351] | [1..332] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MSTEGGFGGT SSSDAQQSLQ SFWPRVMEEI RNLTVKDFRV QELPLARIKK IMKLDEDVKM 60
61 ISAEAPVLFA KAAQIFITEL TLRAWIHTED NKRRTLQRND IAMAITKFDQ FDFLIDIVPR 120
121 DELKPPKRQE E
|
| Detection Method: |  |
| Confidence: | 35.0 |
| Match: | 1n1jB |
| Description: | Nuclear transcription factor Y subunit gamma (Nf-Yc2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 4.8544267677131 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.28941584139552 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| transcription repressor activity | 0.72554769377984 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.0945459819298291 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0736756545988504 | bayes_pls_golite062009 |
|
Region A: Residues: [132-233] |
1 11 21 31 41 51
| | | | | |
1 VRQSVTPAEP VQYYFTLAQQ PTAVQVQGQQ QGQQTTSSTT TIQPGQIIIA QPQQGQTTPV 60
61 TMQVGEGQQV QIVQAQPQGQ AQQAQSGTGQ TMQVMQQIIT NT
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [234-312] |
1 11 21 31 41 51
| | | | | |
1 GEIQQIPVQL NAGQLQYIRL AQPVSGTQVV QGQIQTLATN AQQGQRNASQ GKPRRCLKET 60
61 LQITQTEVQQ GQQQFSQFT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [313-458] |
1 11 21 31 41 51
| | | | | |
1 DGQRNSVQQA RVSELTGEAE PREVKATGNS TPCTSSLPTT HPPSHRAGAS CVCCSQPQQS 60
61 STSPPPSDAL QWVVVEVSGT PNQLETHREL HAPLPGMTSL SPLHPSQQLY QIQQVTMPAG 120
121 QDLAQPMFIQ SANQPSDGQA PQVTGD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
