| Protein: | SOX10 |
| Organism: | Homo sapiens |
| Length: | 466 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOX10.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-59 | [1..466] | [154..621] |
|
|
2.0E-58 | [1..466] | [104..569] |
|
|
2.0E-54 | [1..466] | [1..466] |
|
|
2.0E-54 | [1..466] | [1..466] |
|
|
8.0E-54 | [1..466] | [1..466] |
|
|
1.0E-53 | [1..466] | [1..471] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MAEEQDLSEV ELSPVGSEEP RCLSPGSAPS LGPDGGGGGS GLRASPGPGE LGKVKKEQQD 60
61 GEADDDKFPV CIREAVSQVL SGYDWTLVPM PVRVNGASKS KPHVKRPMNA FMVWAQAARR 120
121 KLADQYPHLH NAELSKTLGK LWRLLNESDK RPFIEEAERL RMQHKKDHPD YKYQPRRRKN 180
181 GKA
|
| Detection Method: |  |
| Confidence: | 23.30103 |
| Match: | 2gzkA |
| Description: | No description for 2gzkA was found. |
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| nucleic acid binding | 5.01228762819617 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 4.06355503548774 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| transcription activator activity | 2.95665802871704 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.75319687398598 | bayes_pls_golite062009 |
| protein binding | 2.18211240370246 | bayes_pls_golite062009 |
| chromatin binding | 1.64428658020027 | bayes_pls_golite062009 |
| transcription repressor activity | 1.53825678633232 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.261169200304829 | bayes_pls_golite062009 |
|
Region A: Residues: [184-353] |
1 11 21 31 41 51
| | | | | |
1 AQGEAECPGG EAEQGGTAAI QAHYKSAHLD HRHPGEGSPM SDGNPEHPSG QSHGPPTPPT 60
61 TPKTELQSGK ADPKRDGRSM GEGGKPHIDF GNVDIGEISH EVMSNMETFD VAELDQYLPP 120
121 NGHPGHVSSY SAAGYGLGSA LAVASGHSAW ISKPPGVALP TVSPPGVDAK
|
| Detection Method: | |
| Confidence: | 1.1 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [354-466] |
1 11 21 31 41 51
| | | | | |
1 AQVKTETAGP QGPPHYTDQP STSQIAYTSL SLPHYGSAFP SISRPQFDYS DHQPSGPYYG 60
61 HSGQASGLYS AFSYMGPSQR PLYTAISDPS PSGPQSHSPT HWEQPVYTTL SRP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
