| Protein: | PRKRA |
| Organism: | Homo sapiens |
| Length: | 313 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRKRA.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-65 | [1..313] | [1..313] |
|
|
2.0E-64 | [1..313] | [1..313] |
|
|
2.0E-64 | [3..313] | [27..337] |
|
|
4.0E-64 | [1..313] | [1..313] |
|
|
4.0E-64 | [1..313] | [1..313] |
|
|
8.0E-64 | [1..313] | [1..313] |
|
|
8.0E-61 | [17..313] | [6..302] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MSQSRHRAEA PPLEREDSGT FSLGKMITAK PGKTPIQVLH EYGMKTKNIP VYECERSDVQ 60
61 IHVPTFTFRV TVGDITCTGE GTSKKLAKHR AAEAAINILK ANASICFAVP DPLMPDP
|
| Detection Method: |  |
| Confidence: | 13.522879 |
| Match: | 2dixA |
| Description: | No description for 2dixA was found. |
| Term | Confidence | Notes |
| RNA binding | 5.07736605479017 | bayes_pls_golite062009 |
| double-stranded RNA binding | 3.47197996469543 | bayes_pls_golite062009 |
| nucleic acid binding | 3.18496581088988 | bayes_pls_golite062009 |
| structural constituent of ribosome | 3.14632751635044 | bayes_pls_golite062009 |
| siRNA binding | 2.97216972787792 | bayes_pls_golite062009 |
| structural molecule activity | 2.6585058058337 | bayes_pls_golite062009 |
| binding | 2.65564350773346 | bayes_pls_golite062009 |
| protein binding | 2.48364477869915 | bayes_pls_golite062009 |
| ribonuclease III activity | 2.17541496872253 | bayes_pls_golite062009 |
| DNA binding | 1.55609377953134 | bayes_pls_golite062009 |
| protein kinase activity | 1.5033075536308 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.47352121883517 | bayes_pls_golite062009 |
| kinase activity | 1.3977924791267 | bayes_pls_golite062009 |
| transcription regulator activity | 1.32350001817922 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 1.22831298721384 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.19693457490298 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.927536998997123 | bayes_pls_golite062009 |
| transcription repressor activity | 0.803014306451579 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.755902465799696 | bayes_pls_golite062009 |
| transferase activity | 0.616475820485559 | bayes_pls_golite062009 |
| mRNA binding | 0.404665180963566 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.35650576095599 | bayes_pls_golite062009 |
| transcription factor activity | 0.298820022613881 | bayes_pls_golite062009 |
| RNA helicase activity | 0.0112094156505713 | bayes_pls_golite062009 |
|
Region A: Residues: [118-195] |
1 11 21 31 41 51
| | | | | |
1 SKQPKNQLNP IGSLQELAIH HGWRLPEYTL SQEGGPAHKR EYTTICRLES FMETGKGASK 60
61 KQAKRNAAEK FLAKFSNI
|
| Detection Method: | |
| Confidence: | 14.39794 |
| Match: | 2cpnA |
| Description: | Solution structure of the second dsRBD of TAR RNA-binding protein 2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [196-313] |
1 11 21 31 41 51
| | | | | |
1 SPENHISLTN VVGHSLGCTW HSLRNSPGEK INLLKRSLLS IPNTDYIQLL SEIAKEQGFN 60
61 ITYLDIDELS ANGQYQCLAE LSTSPITVCH GSGISCGNAQ SDAAHNALQY LKIIAERK
|
| Detection Method: | |
| Confidence: | 17.154902 |
| Match: | 1qu6A |
| Description: | dsRNA-dependent protein kinase pkr |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.07736605479017 | bayes_pls_golite062009 |
| double-stranded RNA binding | 3.47197996469543 | bayes_pls_golite062009 |
| nucleic acid binding | 3.18496581088988 | bayes_pls_golite062009 |
| structural constituent of ribosome | 3.14632751635044 | bayes_pls_golite062009 |
| siRNA binding | 2.97216972787792 | bayes_pls_golite062009 |
| structural molecule activity | 2.6585058058337 | bayes_pls_golite062009 |
| binding | 2.65564350773346 | bayes_pls_golite062009 |
| protein binding | 2.48364477869915 | bayes_pls_golite062009 |
| ribonuclease III activity | 2.17541496872253 | bayes_pls_golite062009 |
| DNA binding | 1.55609377953134 | bayes_pls_golite062009 |
| protein kinase activity | 1.5033075536308 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.47352121883517 | bayes_pls_golite062009 |
| kinase activity | 1.3977924791267 | bayes_pls_golite062009 |
| transcription regulator activity | 1.32350001817922 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 1.22831298721384 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.19693457490298 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.927536998997123 | bayes_pls_golite062009 |
| transcription repressor activity | 0.803014306451579 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.755902465799696 | bayes_pls_golite062009 |
| transferase activity | 0.616475820485559 | bayes_pls_golite062009 |
| mRNA binding | 0.404665180963566 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.35650576095599 | bayes_pls_golite062009 |
| transcription factor activity | 0.298820022613881 | bayes_pls_golite062009 |
| RNA helicase activity | 0.0112094156505713 | bayes_pls_golite062009 |
