Protein: | MSC2 |
Organism: | Saccharomyces cerevisiae |
Length: | 724 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSC2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..724] | [1..724] |
|
0.0 | [1..719] | [2..690] |
|
2.0E-87 | [20..664] | [1..696] |
|
4.0E-87 | [51..664] | [41..690] |
|
3.0E-78 | [87..696] | [93..725] |
|
3.0E-76 | [98..703] | [8..625] |
|
8.0E-74 | [28..506] | [39..537] |
|
8.0E-74 | [87..696] | [95..729] |
Region A: Residues: [1-282] |
1 11 21 31 41 51 | | | | | | 1 MNLQELLAKV PLLLSYPTII LSSNLIVPSH NDLISRAAST SAAEYADEKL IFFSTDHAIR 60 61 LIFLPTFVAS SFNLFAHYFN FINYSSRRKY YVLFTAIYFL SILTAIFHPI QSTCITLLII 120 121 KLLTTADESS PKIALNFKTI LKTFVPFITL TLVILRWDPS FDASSGDVNK ISTSLAAYAL 180 181 LILTLRYASP LILSTLSSSI GVVSKDTSVA QHSISRNKRF PLILVLPIFS FVLLYLMTIV 240 241 NKTYNIQLLM VFVFFGCLSI FFLSLKDLFT EDGNQKKGGQ ED |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [283-372] |
1 11 21 31 41 51 | | | | | | 1 EYCRMFDIKY MISYLWLTRF TILLTGIMAI VVHFLSFNEI TSSIKTDLLS LLFVVVAEYV 60 61 SSFSNKQPDS HSHNHAHHHS HLTDSLPLEN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.846 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
View | Download | 0.821 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.819 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.749 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.735 | a.74.1 | Cyclin-like |
Region A: Residues: [373-502] |
1 11 21 31 41 51 | | | | | | 1 ESMFKQMALN KDTRSIFSFL LLNTAFMFVQ LLYSFRSKSL GLLSDSLHMA LDCTSLLLGL 60 61 IAGVLTKKPA SDKFPFGLNY LGTLAGFTNG VLLLGIVCGI FVEAIERIFN PIHLHATNEL 120 121 LVVATLGLLV |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Term | Confidence | Notes |
transporter activity | 4.27173462293249 | bayes_pls_golite062009 |
Region A: Residues: [503-724] |
1 11 21 31 41 51 | | | | | | 1 NLVGLFAFDH GAHDHGGTDN ENMKGIFLHI LADTLGSVGV VISTLLIKLT HWPIFDPIAS 60 61 LLIGSLILLS ALPLLKSTSA NILLRLDDKK HNLVKSALNQ ISTTPGITGY TTPRFWPTES 120 121 GSSGHSHAHT HSHAENHSHE HHHDQKNGSQ EHPSLVGYIH VQYVDGENST IIKKRVEKIF 180 181 ENVSIKAWVQ VEPQNSTCWC RATSMNTISA NPNSLPLQPI AN |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.