| Protein: | SRO9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 434 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRO9.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-47 | [1..434] | [33..466] |
|
|
3.0E-41 | [6..408] | [137..536] |
|
|
5.0E-35 | [17..349] | [297..606] |
|
|
2.0E-32 | [67..372] | [2..321] |
|
Region A: Residues: [1-199] |
1 11 21 31 41 51
| | | | | |
1 MSAETAAANT ATAPVPEVQE QESSKSKQVN LTPAPLPTSS PWKLAPTEIP VSTISIEDLD 60
61 ATRKKKNRTP TPKSSTATKW VPIKASITVS GTKRSGSKNG ASNGNSNKSK NNKTAASSTS 120
121 SSNANRKKKH HQHNAKKQQQ MKKDGFESAV GEEDSKDATS QENGQSTQQQ QPPHHRNHHH 180
181 SHHHNSNGPQ RRKFHNSNN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [200-250] |
1 11 21 31 41 51
| | | | | |
1 AGMPQNQGFP PQFKPYQGRN ARNNNNNRSK YHNHFHHNQQ HPQQPMVKLQ Q
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [251-434] |
1 11 21 31 41 51
| | | | | |
1 QFYPVQPVLM AINNIARQIE YYFSEENLTV DNYLRSKLSK DGFAPLSLIS KFYRVVNMSF 60
61 GGDTNLILAA LREIVANEAA TVNVAEGTLA AKEGDNVTGE AKEPSPLDKY FVRSKSWSNW 120
121 LPETFETEIN IEKELVGDAL DQFMISLPPV PQQEEESSTE LASQEQETKE DSAPVAAGES 180
181 ESSL
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 1s7aA_ |
| Description: | NMR structure of the La motif of human La protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.16805061653531 | bayes_pls_golite062009 |
| nucleic acid binding | 3.10560219735181 | bayes_pls_golite062009 |
| DNA binding | 2.97348943886804 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.95301685898669 | bayes_pls_golite062009 |
| structural molecule activity | 2.70976099158766 | bayes_pls_golite062009 |
| binding | 2.29601364076827 | bayes_pls_golite062009 |
| transcription factor activity | 2.27922300995509 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.93130370844712 | bayes_pls_golite062009 |
| transcription activator activity | 0.782193398686323 | bayes_pls_golite062009 |
| transcription repressor activity | 0.67795138236883 | bayes_pls_golite062009 |
| RNA binding | 0.345456982950223 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.10854873707001 | bayes_pls_golite062009 |
| protein binding | 0.057263185425224 | bayes_pls_golite062009 |
