YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SRO9
Organism: Saccharomyces cerevisiae
Length: 434 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRO9.

Description E-value Query
Range
Subject
Range
SRO9 - Cytoplasmic RNA-binding protein that associates with translating ribosomes; involved in heme regulat...
gi|207347365 - gi|207347365|gb|EDZ73559.1| YCL037Cp-like protein [Saccharomyces cerevisiae AWRI1631]
2.0E-47 [1..434] [33..466]
gi|3882183 - gi|3882183|dbj|BAA34451.1| KIAA0731 protein [Homo sapiens]
3.0E-41 [6..408] [137..536]
gi|7506734 - gi|7506734|pir||T16754 hypothetical protein R144.7 - Caenorhabditis elegans
5.0E-35 [17..349] [297..606]
gi|26345616 - gi|26345616|dbj|BAC36459.1| unnamed protein product [Mus musculus]
2.0E-32 [67..372] [2..321]

Back

Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAETAAANT ATAPVPEVQE QESSKSKQVN LTPAPLPTSS PWKLAPTEIP VSTISIEDLD  60
   61 ATRKKKNRTP TPKSSTATKW VPIKASITVS GTKRSGSKNG ASNGNSNKSK NNKTAASSTS 120
  121 SSNANRKKKH HQHNAKKQQQ MKKDGFESAV GEEDSKDATS QENGQSTQQQ QPPHHRNHHH 180
  181 SHHHNSNGPQ RRKFHNSNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [200-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGMPQNQGFP PQFKPYQGRN ARNNNNNRSK YHNHFHHNQQ HPQQPMVKLQ Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [251-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFYPVQPVLM AINNIARQIE YYFSEENLTV DNYLRSKLSK DGFAPLSLIS KFYRVVNMSF  60
   61 GGDTNLILAA LREIVANEAA TVNVAEGTLA AKEGDNVTGE AKEPSPLDKY FVRSKSWSNW 120
  121 LPETFETEIN IEKELVGDAL DQFMISLPPV PQQEEESSTE LASQEQETKE DSAPVAAGES 180
  181 ESSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 1s7aA_
Description: NMR structure of the La motif of human La protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 3.16805061653531 bayes_pls_golite062009
nucleic acid binding 3.10560219735181 bayes_pls_golite062009
DNA binding 2.97348943886804 bayes_pls_golite062009
structural constituent of ribosome 2.95301685898669 bayes_pls_golite062009
structural molecule activity 2.70976099158766 bayes_pls_golite062009
binding 2.29601364076827 bayes_pls_golite062009
transcription factor activity 2.27922300995509 bayes_pls_golite062009
sequence-specific DNA binding 0.93130370844712 bayes_pls_golite062009
transcription activator activity 0.782193398686323 bayes_pls_golite062009
transcription repressor activity 0.67795138236883 bayes_pls_golite062009
RNA binding 0.345456982950223 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.10854873707001 bayes_pls_golite062009
protein binding 0.057263185425224 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle