| Protein: | FUN19 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 413 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUN19.
| Description | E-value | Query Range |
Subject Range |
|
|
502.0 | [0..1] | [413..51] |
|
Region A: Residues: [1-209] |
1 11 21 31 41 51
| | | | | |
1 MGLYSPESEK SQLNMNYIGK DDSQSIFRRL NQNLKASNNN NDSNKNGLNM SDYSNNSPYG 60
61 RSYDVRINQN SQNNGNGCFS GSIDSLVDEH IIPSPPLSPK LESKISHNGS PRMASSVLVG 120
121 STPKGAVENV LFVKPVWPNG LSRKRYRYAT YGFLSQYKIF SNLAQPYSKN IINRYNNLAY 180
181 NARHKYSKYN DDMTPPPLPS SSSRLPSPL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [210-312] |
1 11 21 31 41 51
| | | | | |
1 ASPNLNRQAR YNMRKQALYN NNLGKFESDT EWIPRKRKVY SPQRRTMTTS PHRAKKFSPS 60
61 ASTPHTNIAS IEAIHDAPQY IPNVSWKKLP DYSPPLSTLP TDS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.544 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.501 | N/A | N/A | a.109.1 | Class II MHC-associated invariant chain ectoplasmic trimerization domain |
| View | Download | 0.429 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.402 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.401 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
|
Region A: Residues: [313-413] |
1 11 21 31 41 51
| | | | | |
1 NKSLKIEWKG SPMDLSTDPL RNELHPAELV LAQTLRLPCD LYLDSKRRLF LEKVYRLKKG 60
61 LPFRRTDAQK ACRIDVNKAS RLFQAFEKVG WLQDSNFTKY L
|
| Detection Method: | |
| Confidence: | 23.69897 |
| Match: | 2aqeA |
| Description: | Structural and functional analysis of ada2 alpha swirm domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.61657063316558 | bayes_pls_golite062009 |
| DNA binding | 3.20600447901865 | bayes_pls_golite062009 |
| nucleic acid binding | 3.13775670276163 | bayes_pls_golite062009 |
| transcription factor activity | 2.61318050866004 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.14408928200987 | bayes_pls_golite062009 |
| binding | 2.12643314274039 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.77209608685482 | bayes_pls_golite062009 |
| transcription activator activity | 1.75864690109096 | bayes_pls_golite062009 |
| protein binding | 1.62529996900514 | bayes_pls_golite062009 |
| transcription repressor activity | 0.605733396003465 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.380372494934551 | bayes_pls_golite062009 |
| chromatin binding | 0.346262410069781 | bayes_pls_golite062009 |
| transcription factor binding | 0.109547968922689 | bayes_pls_golite062009 |
