| Protein: | RAD52 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 471 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD52.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..471] | [34..504] |
|
|
1.0E-74 | [17..192] | [35..212] |
|
|
1.0E-74 | [16..297] | [35..317] |
|
|
3.0E-71 | [17..297] | [36..317] |
|
Region A: Residues: [1-268] |
1 11 21 31 41 51
| | | | | |
1 MNEIMDMDEK KPVFGNHSED IQTKLDKKLG PEYISKRVGF GTSRIAYIEG WRVINLANQI 60
61 FGYNGWSTEV KSVVIDFLDE RQGKFSIGCT AIVRVTLTSG TYREDIGYGT VENERRKPAA 120
121 FERAKKSAVT DALKRSLRGF GNALGNCLYD KDFLAKIDKV KFDPPDFDEN NLFRPTDEIS 180
181 ESSRTNTLHE NQEQQQYPNK RRQLTKVTNT NPDSTKNLVK IENTVSRGTP MMAAPAEANS 240
241 KNSSNKDTDL KSLDASKQDQ DDLLDDSL
|
| Detection Method: |  |
| Confidence: | 75.69897 |
| Match: | 1kn0A_ |
| Description: | The homologous-pairing domain of Rad52 recombinase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.09705138687537 | bayes_pls_golite062009 |
| nucleic acid binding | 2.62582371207063 | bayes_pls_golite062009 |
| RNA binding | 1.51047378734681 | bayes_pls_golite062009 |
| protein binding | 1.33336414936007 | bayes_pls_golite062009 |
| DNA binding | 1.09648705416581 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.904446819959466 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.76025791808648 | bayes_pls_golite062009 |
| structural molecule activity | 0.65255802837561 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.642887555726933 | bayes_pls_golite062009 |
| transcription regulator activity | 0.558060375765317 | bayes_pls_golite062009 |
| DNA helicase activity | 0.44243422495341 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.403469167264307 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.33006862628358 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.314856869078672 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.26445124843094 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.199046986762565 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.12518470735954 | bayes_pls_golite062009 |
|
Region A: Residues: [269-471] |
1 11 21 31 41 51
| | | | | |
1 MFSDDFQDDD LINMGNTNSN VLTTEKDPVV AKQSPTASSN PEAEQITFVT AKAATSVQNE 60
61 RYIGEESIFD PKYQAQSIRH TVDQTTSKHI PASVLKDKTM TTARDSVYEK FAPKGKQLSM 120
121 KNNDKELGPH MLEGAGNQVP RETTPIKTNA TAFPPAAAPR FAPPSKVVHP NGNGAVPAVP 180
181 QQRSTRREVG RPKINPLHAR KPT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
