YRC Public Data Repository - Protein Structure Prediction

Protein:	DPM1
Organism:	Saccharomyces cerevisiae
Length:	267 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPM1.

Description	E-value	Query Range	Subject Range
gi\|2984166, gi\|1... - gi\|2984166\|gb\|AAC07699.1\| dolichol-phosphate mannosyltransferase [Aquifex aeolicus VF5], gi\|15606924... gi\|7446791 - pir\|\|G70463 dolichol-phosphate mannosyltransferase - Aquifex aeolicus	4.0E-57	[5..262]	[2..247]
gi\|19915022, gi\|... - gi\|20090050\|ref\|NP_616125.1\| glycosyltransferase group 2 family protein [Methanosarcina acetivorans ...	4.0E-55	[1..266]	[1..256]
YKCC_BACSU - Uncharacterized glycosyltransferase ykcC OS=Bacillus subtilis GN=ykcC PE=3 SV=1 gi\|2633643, gi\|1... - gi\|2633643\|emb\|CAB13146.1\| ykcC [Bacillus subtilis subsp. subtilis str. 168], gi\|16078354\|ref\|NP_389...	6.0E-55	[3..267]	[5..257]
gi\|32474179, gi\|... - gi\|32474179\|ref\|NP_867173.1\| dolichol-phosphate mannosyltransferase [Rhodopirellula baltica SH 1], g...	1.0E-54	[5..266]	[70..322]
gi\|209765366, gi... - pir\|\|E85865 probable sugar transferase Z3512 [imported] - Escherichia coli (strain O157:H7, substrai... gi\|208738905, gi... - gi\|208818782\|ref\|ZP_03259102.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|254794149, gi... - gi\|254794149\|ref\|YP_003078986.1\| Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Esc... gi\|208814420, gi... - gi\|208814420\|ref\|ZP_03255749.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|12516600, gi\|... - gi\|15802803\|ref\|NP_288830.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esc... gi\|208728519, gi... - gi\|208808718\|ref\|ZP_03251055.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO57 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O157:H7 GN=ar... gi\|195935633 - gi\|195935633\|ref\|ZP_03081015.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|217327398, gi... - gi\|217327398\|ref\|ZP_03443481.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO5E - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O157:H7 (stra... gi\|189362984, gi... - gi\|189362984\|gb\|EDU81403.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189368273, gi... - gi\|189368273\|gb\|EDU86689.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189357690, gi... - gi\|189357690\|gb\|EDU76109.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168749665, gi... - gi\|188016122\|gb\|EDU54244.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189378876, gi... - gi\|189378876\|gb\|EDU97292.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168787164, gi... - gi\|189372799\|gb\|EDU91215.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189001895, gi... - gi\|189001895\|gb\|EDU70881.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168773018, gi... - gi\|187771016\|gb\|EDU34860.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|15832396, gi\|... - gi\|15832396\|ref\|NP_311169.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esc...	2.0E-53	[3..267]	[8..261]
DPM1 - Dolichol phosphate mannose (Dol-P-Man) synthase of the ER membrane, catalyzes the formation of Dol-P... gi\|190408105 - gi\|190408105\|gb\|EDV11370.1\| dolichol phosphate mannose synthase [Saccharomyces cerevisiae RM11-1a] gi\|151942953 - gi\|151942953\|gb\|EDN61299.1\| dolichol phosphate mannose synthase [Saccharomyces cerevisiae YJM789] DPM1_YEAST - Dolichol-phosphate mannosyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=D...	5.0E-53	[1..267]	[1..267]
gi\|29340694, gi\|... - gi\|29348788\|ref\|NP_812291.1\| putative glycosyltransferase [Bacteroides thetaiotaomicron VPI-5482], g...	1.0E-52	[1..267]	[1..256]
gi\|75243069, gi\|... - gi\|75243069\|ref\|ZP_00726775.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... ARNC_ECOL5 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6:K15:H31 (s... ARNC_ECOK1 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O1:K1 / APEC ... ARNC_ECOUT - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain UTI89... gi\|227835663, gi... - gi\|227887313\|ref\|ZP_04005118.1\| glycosyltransferase [Escherichia coli 83972], gi\|227835663\|gb\|EEJ461... ARNC_ECOL6 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6:H1 (strain... gi\|226901098, gi... - gi\|237704732\|ref\|ZP_04535213.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO45 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O45:K1 (strai... ARNC_ECOL6 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6 GN=arnC PE... ARNC_ECO81 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O81 (strain E...	1.0E-52	[3..267]	[8..261]
gi\|89109071, gi\|... - gi\|89109071\|ref\|AP_002851.1\| undecaprenyl phosphate-L-Ara4FN transferase [Escherichia coli str. K-12... ARNC_ECOBW - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain K12 /... gi\|251785615, gi... - gi\|251785615\|ref\|YP_002999919.1\| hypothetical protein B21_02139 [Escherichia coli BL21], gi\|24237788... gi\|253772822, gi... - gi\|254289026\|ref\|YP_003054774.1\| undecaprenyl phosphate-L-Ara4FN transferase [Escherichia coli BL21(... gi\|253974166, gi... - gi\|254162265\|ref\|YP_003045373.1\| undecaprenyl phosphate-L-Ara4FN transferase [Escherichia coli B str... ARNC_ECOLI - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (EC 2.7.8.-) (Undecaprenyl-phosph... gi\|124501894, gi... - gi\|124526423\|ref\|ZP_01698376.1\| glycosyl transferase, family 2 [Escherichia coli B], gi\|124501894\|gb... EG14090 - undecaprenyl phosphate-L-Ara4FN transferase / Undecaprenyl phosphate-aminoarabinose synthase ARNC_SHIBS - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Shigella boydii serotype 4 (st... ARNC_ECODH - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain K12 /... EG14090 - undecaprenyl phosphate-L-Ara4FN transferase / Undecaprenyl phosphate-aminoarabinose synthase ARNC_ECO55 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain 55989... ARNC_ECOSE - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain SE11)... gi\|194436047, gi... - gi\|83588240\|ref\|ZP_00926865.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... gi\|188494897, gi... - gi\|75512730\|ref\|ZP_00735232.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... ARNC_SHISS - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Shigella sonnei (strain Ss046)... ARNC_ECOHS - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O9:H4 (strain... gi\|190903455, gi... - gi\|75230360\|ref\|ZP_00716850.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... ARNC_ECOLC - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain ATCC ...	1.0E-52	[3..267]	[8..261]
gi\|21224686, gi\|... - gi\|3395543\|emb\|CAA20162.1\| putative sugar transferase [Streptomyces coelicolor A3(2)], gi\|21224686\|r... gi\|7481439 - pir\|\|T34985 probable sugar transferase - Streptomyces coelicolor	1.0E-52	[2..262]	[3..250]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIEYSVIVP AYHEKLNIKP LTTRLFAGMS PEMAKKTELI FVDDNSQDGS VEEVDALAHQ  60
   61 GYNVRIIVRT NERGLSSAVL KGFYEAKGQY LVCMDADLQH PPETVPKLFE SLHDHAFTLG 120
  121 TRYAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	1h7lA_
Description:	Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [126-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVGIDKDWPM YRRVISSTAR MMARPLTIAS DPMSGFFGLQ KKYLENCNPR DINSQGFKIA  60
   61 LELLAKLPLP RDPRVAIGEV PFTFGVRTEG ESKLSGKVII QYLQQLKELY VFKFGANNLI 120
  121 LFITFWSILF FYVCYQLYHL VF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.359	0.298	protein amino acid O-linked glycosylation	a.1.1	Globin-like
View	Download	0.466	0.192	protein amino acid O-linked glycosylation	a.25.1	Ferritin-like
View	Download	0.364	0.013	protein amino acid O-linked glycosylation	a.75.1	Ribosomal protein S7
View	Download	0.458	N/A	N/A	i.11.1	Computational models partly based on NMR data
View	Download	0.342	N/A	N/A	c.95.1	Thiolase-like
View	Download	0.335	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.319	N/A	N/A	a.63.1	Apolipophorin-III
View	Download	0.310	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.297	N/A	N/A	f.1.4	Bcl-2 inhibitors of programmed cell death
View	Download	0.290	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.259	N/A	N/A	a.1.1	Globin-like
View	Download	0.254	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.253	N/A	N/A	f.1.1	Colicin
View	Download	0.253	N/A	N/A	d.189.1	PX domain
View	Download	0.243	N/A	N/A	a.39.1	EF-hand
View	Download	0.239	N/A	N/A	a.1.1	Globin-like
View	Download	0.229	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.228	N/A	N/A	a.25.2	Thermoplasma ferritin-like 4-helical bundle
View	Download	0.225	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.224	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.222	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.220	N/A	N/A	d.6.1	Prion-like
View	Download	0.218	N/A	N/A	f.1.4	Bcl-2 inhibitors of programmed cell death
View	Download	0.208	N/A	N/A	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits