| Protein: | ROX1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 368 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROX1.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-63 | [3..348] | [98..483] |
|
|
3.0E-63 | [3..348] | [98..465] |
|
|
1.0E-62 | [4..348] | [214..570] |
|
|
6.0E-62 | [1..348] | [98..478] |
|
|
5.0E-61 | [3..348] | [98..470] |
|
|
8.0E-61 | [3..347] | [98..494] |
|
|
2.0E-60 | [3..348] | [94..478] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MNPKSSTPKI PRPKNAFILF RQHYHRILID EWTAQGVEIP HNSNISKIIG TKWKGLQPED 60
61 KAHWENLAEK EKLEHERKYP EYKYKPVRKS KK
|
| Detection Method: |  |
| Confidence: | 86.228787 |
| Match: | 1gt0D_ |
| Description: | Sox-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| nucleic acid binding | 5.01228762819617 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| transcription repressor activity | 3.17018042329608 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.96229555092695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.75319687398598 | bayes_pls_golite062009 |
| chromatin binding | 1.64428658020027 | bayes_pls_golite062009 |
| transcription activator activity | 1.62744929149746 | bayes_pls_golite062009 |
| protein binding | 1.131658134984 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.4255419067266 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.261169200304829 | bayes_pls_golite062009 |
|
Region A: Residues: [93-368] |
1 11 21 31 41 51
| | | | | |
1 KQLLLKEIEQ QQQQQQKEQQ QQKQSQPQLQ QPFNNNIVLM KRAHSLSPSS SVSSSNSYQF 60
61 QLNNDLKRLP IPSVNTSNYM VSRSLSGLPL THDKTARDLP QLSSQLNSIP YYSAPHDPST 120
121 RHHYLNVAQA QPRANSTPQL PFISSIINNS SQTPVTTTTT STTTATSSPG KFSSSPNSSV 180
181 LENNRLNSIN NSNQYLPPPL LPSLQDFQLD QYQQLKQMGP TYIVKPLSHT RNNLLSTTTP 240
241 THHHIPHIPN QNIPLHQIIN SSNTEVTAKT SLVSPK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
