YRC Public Data Repository - Protein Structure Prediction

Protein:	MSF1
Organism:	Saccharomyces cerevisiae
Length:	474 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSF1.

Description	E-value	Query Range	Subject Range
gi\|171998 - gi\|171998\|gb\|AAA34800.1\| mitochondrial phenylalanyl-tRNA synthetase alpha subunit precursor	0.0	[1..474]	[1..474]
gi\|8778091 - gi\|8778091\|gb\|AAF79201.1\| phenylalanyl-tRNA synthetase alpha subunit-like protein [Emericella nidula...	4.0E-80	[57..474]	[19..436]
gi\|83586016, gi\|... - gi\|83586016\|ref\|ZP_00924654.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Escherichia coli ... EG10710 - phenylalanine tRNA synthetase, beta subunit / Phenylalanine--tRNA ligase, beta-subunit gi\|157066854, gi... - gi\|75195786\|ref\|ZP_00705856.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Escherichia coli ... SYFB_ECOLI - Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS... gi\|170019937, gi... - gi\|170019937\|ref\|YP_001724891.1\| phenylalanyl-tRNA synthetase subunit beta [Escherichia coli ATCC 87... gi\|170081372, gi... - gi\|170081372\|ref\|YP_001730692.1\| phenylalanine tRNA synthetase, beta subunit [Escherichia coli str. ... gi\|124498960, gi... - gi\|124530857\|ref\|ZP_01701362.1\| phenylalanyl-tRNA synthetase, beta subunit [Escherichia coli B], gi\|... gi\|238862020, gi... - gi\|238900928\|ref\|YP_002926724.1\| phenylalanine tRNA synthetase, beta subunit [Escherichia coli BW295... gi\|251785163, gi... - gi\|251785163\|ref\|YP_002999467.1\| hypothetical protein B21_01671 [Escherichia coli BL21], gi\|24237743... gi\|253324376, gi... - gi\|254288561\|ref\|YP_003054309.1\| phenylalanyl-tRNA synthetase beta subunit [Escherichia coli BL21(DE... gi\|253973674, gi... - gi\|254161773\|ref\|YP_003044881.1\| phenylalanyl-tRNA synthetase beta subunit [Escherichia coli B str. ... EG10710 - phenylalanine tRNA synthetase, beta subunit / Phenylalanine--tRNA ligase, beta-subunit gi\|1742793, gi\|8... - gi\|89108553\|ref\|AP_002333.1\| phenylalanine tRNA synthetase, beta subunit [Escherichia coli str. K-12...	3.0E-79	[44..474]	[392..794]
SYFB_ECOL6 - Phenylalanine--tRNA ligase beta chain OS=Escherichia coli O6 GN=pheT PE=3 SV=1 SYFB_ECOL6 - Phenylalanine--tRNA ligase beta subunit OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... gi\|227885865, gi... - gi\|227885865\|ref\|ZP_04003670.1\| Phenylalanyl-tRNA synthetase beta chain [Escherichia coli 83972], gi...	4.0E-79	[44..474]	[392..794]
gi\|195937397 - gi\|195937397\|ref\|ZP_03082779.1\| phenylalanyl-tRNA synthetase subunit beta [Escherichia coli O157:H7 ... gi\|189377559, gi... - gi\|189377559\|gb\|EDU95975.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... gi\|208730857, gi... - gi\|208816514\|ref\|ZP_03257634.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7... gi\|208725241, gi... - gi\|208810725\|ref\|ZP_03252601.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7... gi\|168774986, gi... - gi\|187769368\|gb\|EDU33212.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... SYFB_ECO57 - Phenylalanine--tRNA ligase beta subunit OS=Escherichia coli O157:H7 GN=pheT PE=3 SV=1 gi\|189360628, gi... - gi\|189360628\|gb\|EDU79047.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... gi\|168788109, gi... - gi\|189371944\|gb\|EDU90360.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... gi\|189000347, gi... - gi\|189000347\|gb\|EDU69333.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... gi\|188016222, gi... - gi\|188016222\|gb\|EDU54344.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... gi\|13361887, gi\|... - gi\|15831674\|ref\|NP_310447.1\| phenylalanyl-tRNA synthetase subunit beta [Escherichia coli O157:H7 str... gi\|189367519, gi... - gi\|189367519\|gb\|EDU85935.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... gi\|168756714, gi... - gi\|189356209\|gb\|EDU74628.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7 str... gi\|209768888, gi... - pir\|\|H85779 phenylalanine tRNA synthetase, beta-subunit [imported] - Escherichia coli (strain O157:H... gi\|15802125, gi\|... - gi\|15802125\|ref\|NP_288147.1\| phenylalanyl-tRNA synthetase subunit beta [Escherichia coli O157:H7 EDL... gi\|254592730, gi... - gi\|254793330\|ref\|YP_003078167.1\| phenylalanine tRNA synthetase, beta subunit [Escherichia coli O157:... gi\|209161311, gi... - gi\|209399911\|ref\|YP_002270783.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H... gi\|208818689, gi... - gi\|208818689\|ref\|ZP_03259009.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7... gi\|217318326, gi... - gi\|217328979\|ref\|ZP_03445060.1\| phenylalanyl-tRNA synthetase, beta-subunit [Escherichia coli O157:H7...	5.0E-79	[44..474]	[392..794]
SYFB_SHIFL - Phenylalanine--tRNA ligase beta subunit OS=Shigella flexneri GN=pheT PE=3 SV=1 gi\|110615025, gi... - gi\|110805477\|ref\|YP_688997.1\| phenylalanyl-tRNA synthetase subunit beta [Shigella flexneri 5 str. 84... gi\|24112891, gi\|... - gi\|24112891\|ref\|NP_707401.1\| phenylalanyl-tRNA synthetase subunit beta [Shigella flexneri 2a str. 30... gi\|30063020, gi\|... - gi\|30063020\|ref\|NP_837191.1\| phenylalanyl-tRNA synthetase subunit beta [Shigella flexneri 2a str. 24...	5.0E-79	[44..474]	[392..794]
gi\|43071 - gi\|43071\|emb\|CAA23565.1\| unnamed protein product [Escherichia coli]	1.0E-78	[44..474]	[392..794]
gi\|16122648, gi\|... - gi\|218929516\|ref\|YP_002347391.1\| phenylalanyl-tRNA synthetase subunit beta [Yersinia pestis CO92], g... gi\|162351829, gi... - gi\|77635560\|ref\|ZP_00797643.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Yersinia pestis A... gi\|22125802, gi\|... - gi\|22125802\|ref\|NP_669225.1\| phenylalanyl-tRNA synthetase subunit beta [Yersinia pestis KIM], gi\|219... gi\|108779680, gi... - gi\|108807767\|ref\|YP_651683.1\| phenylalanyl-tRNA synthetase subunit beta [Yersinia pestis Antiqua], g... gi\|229902355, gi... - gi\|229902355\|ref\|ZP_04517475.1\| phenylalanine tRNA synthetase, beta subunit [Yersinia pestis Nepal51... SYFB_YERPE - Phenylalanine--tRNA ligase beta subunit OS=Yersinia pestis GN=pheT PE=3 SV=1 gi\|165939500, gi... - gi\|89105340\|ref\|ZP_01177861.1\| COG0072: Phenylalanyl-tRNA synthetase beta subunit [Yersinia pestis b... gi\|166211101, gi... - gi\|166211101\|ref\|ZP_02237136.1\| phenylalanyl-tRNA synthetase, beta subunit [Yersinia pestis biovar A... gi\|167400839, gi... - gi\|167400839\|ref\|ZP_02306345.1\| phenylalanyl-tRNA synthetase, beta subunit [Yersinia pestis biovar A... gi\|166958991, gi... - gi\|167422179\|ref\|ZP_02313932.1\| phenylalanyl-tRNA synthetase, beta subunit [Yersinia pestis biovar O... gi\|149292077, gi... - gi\|149365664\|ref\|ZP_01887699.1\| phenylalanyl-tRNA synthetase beta chain [Yersinia pestis CA88-4125],... gi\|167424893, gi... - gi\|167424893\|ref\|ZP_02316646.1\| phenylalanyl-tRNA synthetase, beta subunit [Yersinia pestis biovar M... gi\|229837953, gi... - gi\|229837953\|ref\|ZP_04458112.1\| phenylalanine tRNA synthetase, beta subunit [Yersinia pestis biovar ... gi\|229898514, gi... - gi\|229898514\|ref\|ZP_04513659.1\| phenylalanine tRNA synthetase, beta subunit [Yersinia pestis biovar ... gi\|165920506, gi... - gi\|165927451\|ref\|ZP_02223283.1\| phenylalanyl-tRNA synthetase, beta subunit [Yersinia pestis biovar O... gi\|165989279, gi... - gi\|166011814\|ref\|ZP_02232712.1\| phenylalanyl-tRNA synthetase, beta subunit [Yersinia pestis biovar A...	4.0E-78	[18..474]	[367..794]
gi\|199602551, gi... - gi\|200390106\|ref\|ZP_03216717.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subs... SYFB_SALTY - Phenylalanine--tRNA ligase beta subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|197262355, gi... - gi\|197262355\|ref\|ZP_03162429.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=pheT] [protein=phenylalanyl-tRNA synthetase subunit beta] [protein_id=YP_005237200.1] [locatio... gi\|197247557, gi... - gi\|197247557\|ref\|YP_002146699.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica sub... gi\|238910846 - gi\|238910846\|ref\|ZP_04654683.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subsp... SYFB_SALTY - Phenylalanyl-tRNA synthetase beta chain OS=Salmonella typhimurium GN=pheT PE=3 SV=3 gi\|205332319, gi... - gi\|205332319\|gb\|EDZ19083.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e... gi\|205327737, gi... - gi\|205327737\|gb\|EDZ14501.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e... SYFB_SALTY - Phenylalanine--tRNA ligase beta chain OS=Salmonella typhimurium GN=pheT PE=3 SV=3 gi\|194469827, gi... - gi\|194469827\|ref\|ZP_03075811.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subs... gi\|194449577, gi... - gi\|194449577\|ref\|YP_002045345.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subs... gi\|168822197, gi... - gi\|205341293\|gb\|EDZ28057.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e... gi\|168240841, gi... - gi\|205339386\|gb\|EDZ26150.1\| phenylalanyl-tRNA synthetase, beta-subunit [Salmonella enterica subsp. e...	6.0E-78	[43..474]	[391..794]
gi\|29137311, gi\|... - gi\|29141683\|ref\|NP_805025.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subsp. e... gi\|16760556 - gi\|16760556\|ref\|NP_456173.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subsp. e... SYFB_SALTI - Phenylalanine--tRNA ligase beta subunit OS=Salmonella typhi GN=pheT PE=3 SV=1 SYFB_SALTI - Phenylalanyl-tRNA synthetase beta chain OS=Salmonella typhi GN=pheT PE=3 SV=1 gi\|213426327 - gi\|213426327\|ref\|ZP_03359077.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subsp... gi\|214003067 - gi\|214003067\|ref\|ZP_03413802.1\| phenylalanyl-tRNA synthetase subunit beta [Salmonella enterica subsp...	8.0E-78	[43..474]	[391..794]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVTSMFLNR MMKTRTGLYR LYSTLKVPHV EINGIKYKTD PQTTNVTDSI IKLTDRSLHL  60
   61 KESHPVGILR DLIEKKLNSV DNTFKIFNNF KPVVTTMENF DSLGFPKDHP GRSKSDTYYI 120
  121 NETHLLRTHT SAHELECFQK IRNDSDNIKS GFLISADVYR RDEIDKTHYP VFHQMEGATI 180
  181 WKRTKADVGV KEPMYIEKIR EDIRQVENLL NKENVKITVD DDTIPLKENN PKQEYMSDLE 240
  241 VDLCSQHLKR SIELIVSEVF NKKISSMIKN KANNTPKELK VRW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.221849
Match:	1b70A_
Description:	Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [284-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INAYFPWTAP SWEIEVWWQG EWLELCGCGL IRQDVLLRAG YKPSETIGWA FGLGLDRIAM  60
   61 LLFEIPDIRL LWSRDERFSR QFS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.508638
Match:	PF01409
Description:	tRNA synthetases class II core domain (F)

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [367-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGLITSFKPY SKHPGSFRDV AFWLPEDKPD IHQVHENDLM EIIRNIAGDL VESVKLVDSF  60
   61 THPKTGRKSM CYRINYQSMD RNLTNAEVNT LQDMVCSKLV KEYSVELR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.05061
Match:	PF03147
Description:	Ferredoxin-fold anticodon binding domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits