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View Structure Prediction Details

Protein: SRO7
Organism: Saccharomyces cerevisiae
Length: 1033 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRO7.

Description E-value Query
Range
Subject
Range
SRO7 - Effector of Rab GTPase Sec4p, forms a complex with Sec4p and t-SNARE Sec9p; involved in exocytosis a...
SRO7_YEAST - Lethal(2) giant larvae protein homolog SRO7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...
0.0 [1..1033] [1..1033]
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
0.0 [20..673] [1160..1757]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
0.0 [1..682] [878..1500]

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Predicted Domain #1
Region A:
Residues: [1-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGSKRLKNV KEAFKSLKGQ NSETPIENSK ASFKSKNSKT STISKDAKSS SSLKIPISSN  60
   61 NKNKIFSLAE TNKYGMSSKP IAAAFDFTQN LLAIATVTGE VHIYGQQQVE VVIKLEDRSA 120
  121 IKEMRFVKGI YLVVINAKDT VYVLSLYSQK VLTTVFVPGK ITSIDTDASL DWMLIGLQNG 180
  181 SMIVYDIDRD QLSSFKLDNL QKSSFFPAAR LSPIVSIQWN PRDIGTVLIS YEYVTLTYSL 240
  241 VENEIKQSFI YELPPFAPGG DFSEKTNEKR TPKVIQSLYH PNSLHIITIH EDNSLVFWDA 300
  301 NSGHMIMART VFETEINVPQ PDYIRDSSTN AAKISKVY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.69897
Match: 1erjA_
Description: Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [339-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WMCENNPEYT SLLISHKSIS RGDNQSLTMI DLGYTPRYSI TSYEGMKNYY ANPKQMKIFP  60
   61 LPTNVPIVNI LPIPRQSPYF AGCHNPGLIL LILGNGEIET MLYPSGIFTD KAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.522879
Match: 1c5kA_
Description: TolB, C-terminal domain; TolB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [452-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFPQNLSWLR PLATTSMAAS VPNKLWLGAL SAAQNKDYLL KGGVRTKRQK LPAEYGTAFI  60
   61 TGHSNGSVRI YDASHGDIQD NASFEVNLSR TLNKAKELAV DKISFAAETL ELAVSIETGD 120
  121 VVLFKYEVNQ FYSVENRPES GDLEMNFRRF SLNNTNGVLV DVRDRAPTGV RQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [624-714]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFMPSTAVHA NKGKTSAINN SNIGFVGIAY AAGSLMLIDR RGPAIIYMEN IREISGAQSA  60
   61 CVTCIEFVIM EYGDDGYSSI LMVCGTDMGE V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.877 0.762 Golgi to plasma membrane transport b.1.1 Immunoglobulin

Predicted Domain #5
Region A:
Residues: [715-1033]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITYKILPASG GKFDVQLMDI TNVTSKGPIH KIDAFSKETK SSCLATIPKM QNLSKGLCIP  60
   61 GIVLITGFDD IRLITLGKSK STHKGFKYPL AATGLSYIST VEKNNDRKNL TVIITLEING 120
  121 HLRVFTIPDF KEQMSEHIPF PIAAKYITES SVLRNGDIAI RVSEFQASLF STVKEQDTLA 180
  181 PVSDTLYING IRIPYRPQVN SLQWARGTVY CTPAQLNELL GGVNRPASKY KESIIAEGSF 240
  241 SERSSDDNNA NHPEHQYTKP TRKGRNSSYG VLRNVSRAVE TRWDAVEDRF NDYATAMGET 300
  301 MNEAVEQTGK DVMKGALGF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle