| Protein: | RTT10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1013 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT10.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..605] | [1167..1755] |
|
|
0.0 | [69..768] | [842..1510] |
|
|
0.0 | [6..692] | [545..1187] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MKDLSHYGPA LCVKFYNDYV LAGYGPFIHV YDYHSATLIN KCRLFHYNKV HGLSLSSEGK 60
61 ILAYGARSVT IVELEDVLKK ESLVDFERIN SDWITGATFS FDNLQIYLLT CYNKVL
|
| Detection Method: |  |
| Confidence: | 124.10721 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [117-419] |
1 11 21 31 41 51
| | | | | |
1 ICDLNCEVLF RKSLGGERSI LYSGIIKVFG PDKVYVNAGT VMGGVIIWDL FSETKIHNLL 60
61 GHEGSIFYVN LSNNGRYVAS CSDDRSIRLW DLETGKQLSV GWSHTARIWN LMFFDNDSKL 120
121 ISVSEDCTCR VWNIIESREN VAELSISNVY EVHLIKSIWG VDVKDDEMIA VTSGNDGRLK 180
181 LIDLLQLKRH GDEETSFSLD DIAKQCGDIF EKNESIKGFQ WFSFGVIAIT SLGKILKYSD 240
241 VTKQWKLLLT NEKFNSYPIT NGIQTQNIAV FSNNKSDILL IKFSKDSADI IETEEFHLDE 300
301 LSK
|
| Detection Method: | |
| Confidence: | 126.9794 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [420-498] |
1 11 21 31 41 51
| | | | | |
1 TNNCLVTEYD DDSFLLTLQS PNPREKFVCL EISLQNLKIK SKHCFNKPEN FSSSCLTSFR 60
61 NHILVGSRFS TLVIYNLLD
|
| Detection Method: | |
| Confidence: | 6.221849 |
| Match: | 1l0qA_ |
| Description: | Surface layer protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [499-811] |
1 11 21 31 41 51
| | | | | |
1 ESEEPFIIRR LSPGDTTTSI EFVEDKDNSA VFSVTNRDGY YVFIELTKNS LEEGPYRLSY 60
61 KVLHSNKMMK GFLEGAFFNS KGEYITYGFK SSLFYLYNET NCYELASEVC GGSHRLWNLA 120
121 KITDGHVLMY IKASRFHLRK IYNSIVPETL ENGVHGREIR DISICPVSNT NTNDNFKDGH 180
181 IFCTASEDTT IKLGYFNNRT GKVQNFWTQR KHVSGLQRCQ FINHKLMISS SAREELFLWE 240
241 LNDKYNKRPY MTIRQALPVS TNNSDLRIMD FDVKFISQSG DFLLVTVYSD STIKIWHYRE 300
301 NQNKFDLIMQ GRY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transcription repressor activity | 0.826090766828089 | bayes_pls_golite062009 |
| transcription regulator activity | 0.579815310385678 | bayes_pls_golite062009 |
| nucleic acid binding | 0.570141050045461 | bayes_pls_golite062009 |
| transcription factor binding | 0.271710180601245 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.259860754265901 | bayes_pls_golite062009 |
| DNA binding | 0.0736878329528894 | bayes_pls_golite062009 |
|
Region A: Residues: [812-1013] |
1 11 21 31 41 51
| | | | | |
1 KTCCLFNVVF IALKEELLVV ISPTDGHLVV YNITEYVPFS VDPISGDLVD HKLDATISNL 60
61 PAPVAQLPVH QSGVKSLDYV ANATRTSATI LTGGDDNGLG LSNLKLDDSN KVTLKTSDFI 120
121 AAAASSTITS GMLINGGKEV ITTSVDQVIR AWEITAGKLS LVDKKRTTVA DTGSLEIISN 180
181 DEDADSEKTL LIGGVGLSIW KK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
