| Protein: | PEP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 405 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEP4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..403] | [1..384] |
|
|
0.0 | [4..403] | [1..383] |
|
|
0.0 | [4..403] | [2..385] |
|
|
0.0 | [4..403] | [1..386] |
|
|
0.0 | [4..404] | [1..395] |
|
|
0.0 | [4..405] | [1..380] |
|
|
0.0 | [4..403] | [1..384] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MFSLKALLPL ALLLVSANQV AAKVHKAKIY KHELSDEMKE VTFEQHLAHL GQKYLTQFEK 60
61 ANPEVVFSRE HPFF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.887 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| Term | Confidence | Notes |
| aspartic-type endopeptidase activity | 7.9145950161796 | bayes_pls_golite062009 |
| aspartic-type peptidase activity | 7.9145950161796 | bayes_pls_golite062009 |
| peptidase activity | 5.78181196721293 | bayes_pls_golite062009 |
| endopeptidase activity | 5.4888481808613 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 5.39972232367526 | bayes_pls_golite062009 |
| hydrolase activity | 4.34796304893506 | bayes_pls_golite062009 |
| catalytic activity | 1.54514410489082 | bayes_pls_golite062009 |
| binding | 1.10054369202721 | bayes_pls_golite062009 |
| receptor binding | 0.561225023505917 | bayes_pls_golite062009 |
| protein binding | 0.193907750061394 | bayes_pls_golite062009 |
|
Region A: Residues: [75-91] |
1 11 21 31 41 51
| | | | | |
1 TEGGHDVPLT NYLNAQY
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|
Region B: Residues: [225-405] |
1 11 21 31 41 51
| | | | | |
1 EKRFAFYLGD TSKDTENGGE ATFGGIDESK FKGDITWLPV RRKAYWEVKF EGIGLGDEYA 60
61 ELESHGAAID TGTSLITLPS GLAEMINAEI GAKKGWTGQY TLDCNTRDNL PDLIFNFNGY 120
121 NFTIGPYDYT LEVSGSCISA ITPMDFPEPV GPLAIVGDAF LRKYYSIYDL GNNAVGLAKA 180
181 I
|
| Detection Method: | |
| Confidence: | 10123.0 |
| Match: | 1dp5A_ |
| Description: | Acid protease |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [92-224] |
1 11 21 31 41 51
| | | | | |
1 YTDITLGTPP QNFKVILDTG SSNLWVPSNE CGSLACFLHS KYDHEASSSY KANGTEFAIQ 60
61 YGTGSLEGYI SQDTLSIGDL TIPKQDFAEA TSEPGLTFAF GKFDGILGLG YDTISVDKVV 120
121 PPFYNAIQQD LLD
|
| Detection Method: | |
| Confidence: | 10123.0 |
| Match: | 1dp5A_ |
| Description: | Acid protease |
| Matching Structure (courtesy of the PDB): |
|
