| Protein: | UME1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 460 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UME1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [2..444] | [6..405] |
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0.0 | [2..444] | [6..405] |
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0.0 | [2..444] | [6..405] |
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0.0 | [2..444] | [6..405] |
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1.0E-99 | [3..444] | [11..409] |
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4.0E-98 | [42..460] | [1167..1638] |
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Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MSTLDIAEDN KIKNEEFKIW KKSIPSLYQH ISSLKPIFGS GVDESPSTLR SIVFTNDSSC 60
61 NKSK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.594 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.594 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.498 | a.112.1 | Description not found. |
| View | Download | 0.498 | a.112.1 | Description not found. |
| View | Download | 0.494 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.494 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.480 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.480 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.461 | a.112.1 | Description not found. |
| View | Download | 0.437 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.434 | a.64.1 | Saposin |
| View | Download | 0.430 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.411 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.369 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.364 | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.363 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.362 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.356 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.346 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.337 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.326 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.324 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.321 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.306 | a.39.1 | EF-hand |
| View | Download | 0.298 | a.74.1 | Cyclin-like |
| View | Download | 0.278 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.266 | d.15.1 | Ubiquitin-like |
| View | Download | 0.255 | d.58.17 | Metal-binding domain |
| View | Download | 0.245 | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.243 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.240 | a.20.1 | PGBD-like |
| View | Download | 0.239 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.233 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.227 | a.77.1 | DEATH domain |
| View | Download | 0.203 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
|
Region A: Residues: [65-460] |
1 11 21 31 41 51
| | | | | |
1 GVLSVPLLYS QGSEIFEVDC IVPLGLHYKK PESISEPLVQ PDYTMESQKV EQTVLIPKWE 60
61 FKGETIAKMI YVDNSEINVK VIALSTNGSL AWFREGVKSP VYTMMEPSTS LSSASSGNQN 120
121 KPCVDFAISN DSKTLTVTKE KHLDNENATI KLIDNSGKIG EVLRTIPVPG IKNIQEIKFL 180
181 NNQIFATCSD DGIIRFWGNE IGKKPLWILN DSLDGKTTCF AASPFVDTLF MTGTSGGALK 240
241 VWDIRAVIAL GDADAELNIN QGHNKVNELF KVHHFYSEQV SKIEFSSISP MEVVTIGGLG 300
301 NVYHWNFEPV FAIYNEIHED FQGIISDELE AESMAFYHTE GCRREIGENN KVNTVAYHKY 360
361 IEDLVATVDS DGLLTVYKPF TGKVLDGSRE VGAAKS
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| Detection Method: | |
| Confidence: | 61.30103 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| transcription activator activity | 1.23969853550045 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.21305848427711 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.19593750149343 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| 0.88172763425403 | bayes_pls_golite062009 | |
| transporter activity | 0.692270256454453 | bayes_pls_golite062009 |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.676924760416604 | bayes_pls_golite062009 |
| transcription repressor activity | 0.658573452658359 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.612501046529002 | bayes_pls_golite062009 |
| actin binding | 0.529861581509437 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| histone methyltransferase activity | 0.311523647180993 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| structural molecule activity | 0.254012051644049 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.182612389752591 | bayes_pls_golite062009 |
| chromatin binding | 0.151977098745772 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.121183207943714 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
