Protein: | RDS2 |
Organism: | Saccharomyces cerevisiae |
Length: | 446 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDS2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..446] | [1..446] |
|
0.0 | [5..438] | [42..458] |
|
0.0 | [30..444] | [43..528] |
|
2.0E-48 | [3..268] | [41..300] |
|
1.0E-47 | [3..268] | [41..300] |
|
4.0E-39 | [3..268] | [115..394] |
|
2.0E-38 | [3..268] | [59..308] |
Region A: Residues: [1-55] |
1 11 21 31 41 51 | | | | | | 1 MSANSGVKRA SKAFKTCLFC KRSHVVCDKQ RPCSRCVKRD IAHLCREDDI AVPNE |
Detection Method: | |
Confidence: | 30.457575 |
Match: | 1pyc__ |
Description: | Hap1 (Cyp1) |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 4.03513015433673 | bayes_pls_golite062009 |
DNA binding | 3.83205668382335 | bayes_pls_golite062009 |
nucleic acid binding | 3.67300498747674 | bayes_pls_golite062009 |
binding | 2.91929847152301 | bayes_pls_golite062009 |
transcription factor activity | 2.68631095170929 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.68175655600795 | bayes_pls_golite062009 |
transcription activator activity | 1.89281746291341 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.69668907232116 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.63882951698535 | bayes_pls_golite062009 |
Region A: Residues: [56-197] |
1 11 21 31 41 51 | | | | | | 1 MPSQHESSPN DNNIQGKYAN KAHTGIPSDY QNEPVNKSGS TYGEELSPKL DSSLVNDTTS 60 61 LLLPQQPVFV SENVGSEFSS LNEFLSMLEN PLLTQTSLSS SSASNVHLEN GSQTTQSPLE 120 121 YQNDNRRDEI GVARQENRSP TI |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.443 | 0.948 | response to xenobiotic stimulus | a.1.1 | Globin-like |
Region A: Residues: [198-446] |
1 11 21 31 41 51 | | | | | | 1 MSGSSNSISK GDKQDQEKEE SRILANANEN SAPTPKEQFF LTAADPSTEM TPEHRLKLVI 60 61 NAKLEAGLLK PYNYAKGYAR LQDYMDKYMN QSSKQRILKP LSTIRPAFRT IARSLKDVDL 120 121 VLVEESFERM LLSYDRVFTS MSMPACLCRR TGEIYRANKE FASLVDCTVD DLRDGKLAIY 180 181 ELMTEESAVN FWEKYGSIAF DKGQKAVLTS CSLRTKDGIR KRPCCFSFTI RRDRYNIPIC 240 241 IVGNFIPLS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [269-446] |
1 11 21 31 41 51 | | | | | | 1 YNYAKGYARL QDYMDKYMNQ SSKQRILKPL STIRPAFRTI ARSLKDVDLV LVEESFERML 60 61 LSYDRVFTSM SMPACLCRRT GEIYRANKEF ASLVDCTVDD LRDGKLAIYE LMTEESAVNF 120 121 WEKYGSIAFD KGQKAVLTSC SLRTKDGIRK RPCCFSFTIR RDRYNIPICI VGNFIPLS |
Detection Method: | |
Confidence: | 1.77 |
Match: | 1kouA |
Description: | Photoactive yellow protein, PYP |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 3.7467368529492 | bayes_pls_golite062009 |
DNA binding | 3.40921169912637 | bayes_pls_golite062009 |
nucleic acid binding | 3.24167117005747 | bayes_pls_golite062009 |
binding | 3.0194696248926 | bayes_pls_golite062009 |
transcription activator activity | 2.83653821066646 | bayes_pls_golite062009 |
transcription factor activity | 2.82130392807705 | bayes_pls_golite062009 |
protein binding | 2.65718874796652 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.35155212316148 | bayes_pls_golite062009 |
transcription factor binding | 2.0886105134698 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.80286525617588 | bayes_pls_golite062009 |
protein heterodimerization activity | 1.6684022582724 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity, enhancer binding | 1.34975446517091 | bayes_pls_golite062009 |
protein dimerization activity | 1.32117360800315 | bayes_pls_golite062009 |
transcription cofactor activity | 0.894812998943802 | bayes_pls_golite062009 |
transcription coactivator activity | 0.718695359890957 | bayes_pls_golite062009 |
histone acetyltransferase binding | 0.398021385666875 | bayes_pls_golite062009 |
receptor binding | 0.19484761881511 | bayes_pls_golite062009 |
nuclear hormone receptor binding | 0.180141371842267 | bayes_pls_golite062009 |